View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19714_low_3 (Length: 473)
Name: NF19714_low_3
Description: NF19714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19714_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Original strand, 15175240 - 15175682
Alignment:
| Q |
15 |
gatgttttggtaaggagaaatgggacaagaggatgttttggtgaggagaaattggacaagagatgaaaaaagttgaacgatcatctactagtacatgtat |
114 |
Q |
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| T |
15175240 |
gatgttttggtcaggagaaatgggacaagaggatgttttggtgaggagaaattggacaagagatgaaaaaagttgaatgatcatctactggtacatatat |
15175339 |
T |
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| Q |
115 |
gatgcatgctataagttgtgcgtcgtgcaacttggagagagtttgaaggtgttcaatcactgcctcatgcacaatgctgccaaggatatgtgcagtgtgc |
214 |
Q |
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| T |
15175340 |
gatgcgtgttataagttgtgcgtcgtgcaacttggagagagtttgaaggtgttcagtcactgcctcatgcacaatgcagacaaggatatgtgcagtgtgc |
15175439 |
T |
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| Q |
215 |
atagattgttccgaatatattggaaatgttcgtctataaatnnnnnnnngtcttgcatcgttggaaaaacactctctgacgatcaaaacacaaccaaatc |
314 |
Q |
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| T |
15175440 |
atagattgttccgaatatattggaaatgttcgtctataaataaaaaaaagtcttgcatcgttggaaaaacactctccgacgatcaaaacacaaccaaatc |
15175539 |
T |
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| Q |
315 |
gcaatttgaaaggctaggagcgaccataaacatccaagagacgagcatttatcatacagtgatcctttattcatgtatttctatacatatgtaatagttt |
414 |
Q |
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| T |
15175540 |
gcaatttgaaaggctaggagcgaccataaacatccaagagacgagcatttatcatacggtgatcctttattcatgtatttctatacatatgtaatagttt |
15175639 |
T |
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| Q |
415 |
atatgtttagttatcatgagttgctagttttctaggttatgtt |
457 |
Q |
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| T |
15175640 |
atatgtttagttatcatgagttgctagttttctaggttatgtt |
15175682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 449
Target Start/End: Original strand, 39266488 - 39266635
Alignment:
| Q |
300 |
aaacacaaccaaatcgcaatttgaaaggctaggagcgaccataaacatccaagagacgagcatttatcatacagtgatcctttattcatgtatttctata |
399 |
Q |
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| T |
39266488 |
aaacacaacaaaatcgcaatttataaggctaggagcaaccaaaaacattcaggatgtgaggatttatcatacaatgatcttttattcatgtatttaataa |
39266587 |
T |
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| Q |
400 |
catatgtaatagtttatatgtttagttatcatgagttgctagttttctag |
449 |
Q |
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| T |
39266588 |
catattcaattgtt--tatgtttagttatcatgagtagctagttttctag |
39266635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 33752971 - 33753067
Alignment:
| Q |
49 |
gttttggtgaggagaaattggacaagagatgaa-aaaagttgaacgatcatctactagtacatgtatgatgcatgctataagttgtgcgtcgtgcaa |
144 |
Q |
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| T |
33752971 |
gttttagtgaggagaaattcgagaagagatgaagaaaagttgaaggatcagctacaagtacatgcatgatgcatactatgagtagtgtgtcgtgcaa |
33753067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 33742774 - 33742881
Alignment:
| Q |
83 |
aaagttgaacgatcatctactagtacatgtatgatgcatgctataagttgtgcgtcgtgcaacttggagagagtttgaaggtgttcaatcactgcctcat |
182 |
Q |
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| T |
33742774 |
aaagttgaaggatcatttactcgtacatgtgtaatggatactatgagttgtgtgtcacagagcatggaaagaatttgaaggtgttcaatcactgtctcat |
33742873 |
T |
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| Q |
183 |
gcacaatg |
190 |
Q |
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| T |
33742874 |
gcacaatg |
33742881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 396
Target Start/End: Complemental strand, 33146433 - 33146303
Alignment:
| Q |
266 |
cttgcatcgttggaaaaacactctctgacgatcaaaacacaaccaaatcgcaatttgaaaggctaggagcgaccataaacatccaagagacgagcattta |
365 |
Q |
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| T |
33146433 |
cttgcctcattggaaaaacattccctgacattaaaaacacaacaaaattgtgatttggaaggctaggagtgaccggaaagatcccagaggtgaggattca |
33146334 |
T |
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| Q |
366 |
tcatacagtgatcctttattcatgtatttct |
396 |
Q |
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| T |
33146333 |
tcaaacggtgatccttaattcatgtatttct |
33146303 |
T |
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