View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19714_low_4 (Length: 345)
Name: NF19714_low_4
Description: NF19714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19714_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 109 - 345
Target Start/End: Original strand, 39128251 - 39128487
Alignment:
| Q |
109 |
aaacatggtcactaggtgtttagtatttgggtttgttttttgaaatttcctaaacaaagcttcttcttttcaacattatcatcatgtattctagctaaaa |
208 |
Q |
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| T |
39128251 |
aaacatggtcactaggtgtttagtatttgggtttgttttttgaaatttcctaaacaaagcttcttcttttcaacattatcataatgtattctagctaaaa |
39128350 |
T |
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| Q |
209 |
gaaccacatttcttatcttttacctatatattttgttaatggtagtagtaaatgtttgttttatttttgttagtgagagggtttcaaaaccattttatgc |
308 |
Q |
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| T |
39128351 |
gaatcacatttcttatcttttacctatatattttgttaatggtagtagtaaatgtttgttttatttttgttagtgagagggtttcaaaaccattttatgc |
39128450 |
T |
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| Q |
309 |
tttgtgtcaatacaatagtatcactgtgtttatgttt |
345 |
Q |
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| T |
39128451 |
tctgtgtcaatacaatagtatcactttgtttatgttt |
39128487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 39128166 - 39128209
Alignment:
| Q |
13 |
atgtatcttcatttttgtaaccaccaaacaacattgttaccagg |
56 |
Q |
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| T |
39128166 |
atgtatcttcatttttgtaaccaccaaacaacattgttaccagg |
39128209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 345
Target Start/End: Original strand, 39128564 - 39128607
Alignment:
| Q |
302 |
tttatgctttgtgtcaatacaatagtatcactgtgtttatgttt |
345 |
Q |
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| T |
39128564 |
tttatgctttgtgtcaacacaatagtatcactgtgtttatgttt |
39128607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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