View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19714_low_7 (Length: 270)

Name: NF19714_low_7
Description: NF19714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19714_low_7
NF19714_low_7
[»] chr6 (4 HSPs)
chr6 (67-231)||(34007563-34007729)
chr6 (12-230)||(29282679-29282899)
chr6 (129-196)||(24430636-24430703)
chr6 (35-103)||(24430636-24430704)
[»] chr2 (5 HSPs)
chr2 (12-239)||(28293450-28293679)
chr2 (86-231)||(7826047-7826194)
chr2 (155-231)||(43780628-43780706)
chr2 (196-231)||(22142348-22142383)
chr2 (103-187)||(28293597-28293681)
[»] chr7 (3 HSPs)
chr7 (120-230)||(45832874-45832987)
chr7 (199-231)||(44118241-44118273)
chr7 (12-56)||(45832859-45832903)
[»] chr4 (1 HSPs)
chr4 (156-231)||(47960481-47960558)
[»] chr1 (2 HSPs)
chr1 (156-231)||(44617957-44618031)
chr1 (156-206)||(44790592-44790642)
[»] chr3 (4 HSPs)
chr3 (196-231)||(38507978-38508013)
chr3 (122-189)||(46832322-46832389)
chr3 (193-231)||(46832153-46832191)
chr3 (161-230)||(45637565-45637636)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 34007729 - 34007563
Alignment:
Q  67 atatgtcatattctactttatttcattagacattatatatcagagtcttggagcttattttgtacttgcctttcttcgacatctatagatattatatgtt 166  Q
    |||||||||||||| |||||||| |||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  34007729 atatgtcatattctgctttattttattagatactatatatcagagtcttgaagcttattttgtacttgactttcttcgacatttacagatattatatgtt 34007630  T
Q  167 atattctgctttcttttattacata--ttatatgacccgtgcgacagcacgggtaggagatctagtt 231  Q
    || |||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||    
T  34007629 attttctgctttcttttattacacactatatatgacccgtgcgacagcacgggtaggagatctagtt 34007563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 29282679 - 29282899
Alignment:
Q  12 atgagagcctttgagcttattttatacttgactttctgtgacatctacttatcttatatgtcatattctactttatttcattagacattatatatcagag 111  Q
    ||||||||||||||| | ||||| |||||||||||||  ||||| |||  || ||||| |||||||||| |||||||| |||||||  ||||||||| ||    
T  29282679 atgagagcctttgagatcattttgtacttgactttctccgacatgtacagattttataggtcatattctgctttattttattagacgctatatatcatag 29282778  T
Q  112 tcttggagcttattttgtacttgcctttcttcgacatctatagatattatatgttatattctgctttcttttattacatat--tatatgacccgtgcgac 209  Q
     ||||||||||||||| |||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||  ||||||||||||||  |    
T  29282779 ccttggagcttattttatacttgactttctccgacatctacatatattatatgttatattctgctttcttttattacacattatatatgacccgtgctgc 29282878  T
Q  210 agcacgggtaggagatctagt 230  Q
    ||||||||| | |||||||||    
T  29282879 agcacgggtggaagatctagt 29282899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 24430703 - 24430636
Alignment:
Q  129 tacttgcctttcttcgacatctatagatattatatgttatattctgctttcttttattacatattata 196  Q
    |||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||    
T  24430703 tacttgactttctccgacatctacatatattatatgttatattctgctttcttttattacacattata 24430636  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 24430704 - 24430636
Alignment:
Q  35 atacttgactttctgtgacatctacttatcttatatgtcatattctactttatttcattagacattata 103  Q
    ||||||||||||||  ||||||||| ||| |||||||| ||||||| |||| ||| |||| ||||||||    
T  24430704 atacttgactttctccgacatctacatatattatatgttatattctgctttcttttattacacattata 24430636  T

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Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 28293679 - 28293450
Alignment:
Q  12 atgagagcctttgagcttattttatacttgactttctgtgacatctacttatcttatatgtcatattctactttatttcattagacattatatatcagag 111  Q
    ||||||||||||||| ||||||| |||||||||||||  | ||| |||  || ||||| |||||||| | |||||||| |||||||  ||||||||| ||    
T  28293679 atgagagcctttgagattattttgtacttgactttctccggcatatacagattttataggtcatattatgctttattttattagacgctatatatcatag 28293580  T
Q  112 tcttggagcttattttgtacttgcctttcttcgacatctatagatattatatgttatattctgctttcttttattacatat--tatatgacccgtgcgac 209  Q
     |||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||||| ||||||||||||||| ||  ||||||||||||||| |    
T  28293579 ccttggagcttattttgtacttgactttctccgacatctacatatattatatgttatattctactttcttttattacacattatatatgacccgtgcggc 28293480  T
Q  210 agcacgggtaggagatctagttgattgaaa 239  Q
    ||||||||| ||||||||||| ||| ||||    
T  28293479 agcacgggtgggagatctagtagatagaaa 28293450  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 7826194 - 7826047
Alignment:
Q  86 atttcattagacattatatatcagagtcttggagcttattttgtacttgcctttcttcgacatctatagatattatatgttatattctgctttcttttat 185  Q
    |||| ||||||||  |||||||| ||||||||| ||| |||||||| || |||| | | | ||||| | ||||||||||||||||||| |||| ||||||    
T  7826194 attttattagacaccatatatcatagtcttggaactttttttgtacctgactttatccaatatctacaaatattatatgttatattctactttattttat 7826095  T
Q  186 tacatattat--atgacccgtgcgacagcacgggtaggagatctagtt 231  Q
    |||| | |||  ||||||||||||||||||||||| || |||||||||    
T  7826094 tacacactataaatgacccgtgcgacagcacgggtgggggatctagtt 7826047  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 43780628 - 43780706
Alignment:
Q  155 atattatatgttatattctgctttcttttattacata--ttatatgacccgtgcgacagcacgggtaggagatctagtt 231  Q
    ||||||||||| |||||||||||||||||||||| ||   ||||||| |||||||| ||||||||||||||||||||||    
T  43780628 atattatatgtcatattctgctttcttttattacctaatatatatgatccgtgcgatagcacgggtaggagatctagtt 43780706  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 22142383 - 22142348
Alignment:
Q  196 atgacccgtgcgacagcacgggtaggagatctagtt 231  Q
    |||||||||||||||||||||||||| |||||||||    
T  22142383 atgacccgtgcgacagcacgggtaggcgatctagtt 22142348  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 28293681 - 28293597
Alignment:
Q  103 atatcagagtcttggagcttattttgtacttgcctttcttcgacatctatagatattatatgttatattctgctttcttttatta 187  Q
    |||| |||| ||| ||| |||||||||||||| |||||| || ||| || |||| ||||| || ||||| |||||| ||||||||    
T  28293681 atatgagagcctttgagattattttgtacttgactttctccggcatatacagattttataggtcatattatgctttattttatta 28293597  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 45832874 - 45832987
Alignment:
Q  120 cttattttgtacttgcctttcttcgacatctatagatattatatgtt-atattctgctttcttttattacatattata--tgacccgtgcgacagcacgg 216  Q
    ||||||||||||||| ||||||| ||||||   | |||||||||||| ||||| ||||||||||||||||| ||||||  ||||||||||||||||||||    
T  45832874 cttattttgtacttgactttctttgacatcagcaaatattatatgtttatattttgctttcttttattacacattatatatgacccgtgcgacagcacgg 45832973  T
Q  217 gtaggagatctagt 230  Q
    || || ||||||||    
T  45832974 gttggggatctagt 45832987  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 44118241 - 44118273
Alignment:
Q  199 acccgtgcgacagcacgggtaggagatctagtt 231  Q
    ||||||||||||||||||||||| |||||||||    
T  44118241 acccgtgcgacagcacgggtaggggatctagtt 44118273  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 45832859 - 45832903
Alignment:
Q  12 atgagagcctttgagcttattttatacttgactttctgtgacatc 56  Q
    |||| ||||||||| |||||||| ||||||||||||| |||||||    
T  45832859 atgacagcctttgaacttattttgtacttgactttctttgacatc 45832903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 47960558 - 47960481
Alignment:
Q  156 tattatatgttatattctgctttcttttattacatattata--tgacccgtgcgacagcacgggtaggagatctagtt 231  Q
    ||||||||||||||||||||||| |||||||||| | ||||  ||||||||||||||| |||||||||||||||||||    
T  47960558 tattatatgttatattctgctttattttattacacactataaatgacccgtgcgacagtacgggtaggagatctagtt 47960481  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 44618031 - 44617957
Alignment:
Q  156 tattatatgttatattctgctttcttttattacatattatatgacccgtgcgacagcacgggtaggagatctagtt 231  Q
    |||||||||||||||||| |||||||||||||||   ||||||||||||||   ||||||||| || |||||||||    
T  44618031 tattatatgttatattcttctttcttttattacactatatatgacccgtgcagtagcacgggt-ggggatctagtt 44617957  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 44790592 - 44790642
Alignment:
Q  156 tattatatgttatattctgctttcttttattacatattatatgacccgtgc 206  Q
    |||||||||||||||||| |||||||||||||||   ||||||||||||||    
T  44790592 tattatatgttatattcttctttcttttattacactatatatgacccgtgc 44790642  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 38508013 - 38507978
Alignment:
Q  196 atgacccgtgcgacagcacgggtaggagatctagtt 231  Q
    |||||||||||||||||||||||||| |||||||||    
T  38508013 atgacccgtgcgacagcacgggtaggcgatctagtt 38507978  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 46832389 - 46832322
Alignment:
Q  122 tattttgtacttgcctttcttcgacatctatagatattatatgttatattctgctttcttttattaca 189  Q
    ||||||||||||| |||||| | ||||||| | ||||| ||||| || |||||||||||| |||||||    
T  46832389 tattttgtacttgactttctcctacatctacaaatattttatgtcatcttctgctttcttatattaca 46832322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 46832191 - 46832153
Alignment:
Q  193 tatatgacccgtgcgacagcacgggtaggagatctagtt 231  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  46832191 tatatgacacgtgcgacagcatgggtaggagatctagtt 46832153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 45637636 - 45637565
Alignment:
Q  161 tatgttatattctgctttcttttattacatattatat--gacccgtgcgacagcacgggtaggagatctagt 230  Q
    |||||||||||| ||||||||||||| || | |||||  ||||||||||||| ||||| | || ||||||||    
T  45637636 tatgttatattcggctttcttttattgcacactatatatgacccgtgcgacaacacggattggggatctagt 45637565  T

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