View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19715_high_1 (Length: 563)
Name: NF19715_high_1
Description: NF19715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19715_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 28030300 - 28029876
Alignment:
| Q |
1 |
gcattgtctatgagagaaaatagaaataatgcatggtctatgagggaaaggggacattacatagttgatttacagcagatcaatatgtctttcggcacga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28030300 |
gcattgtctatgagggaaaatagaaataatgcatggtctatgagggaaaggggacattacatagttgatttacagcagatcaatatgtctttcggcacga |
28030201 |
T |
|
| Q |
101 |
ttgcagagattgctaggtgtgcaataagagcattgccgccggttaaaagctttgatggtgacaaaaacactgactgtcctatttgcatggatgaattcac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
28030200 |
ttgcagagattgctaggtgtgcaataagagcattgccgccggttaaaagctttgatggtgacaaaaacactgattgtcctatttgcgtggatgaattcac |
28030101 |
T |
|
| Q |
201 |
aaaaggcgagatgattcaatcttttggagtgtgtggccatgaatttcatactgcgtgtctcaactcgtggttacttggaggaaaaactacttgtccagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28030100 |
aaaaggcgagatgattcaatcttttggagtgtgtggccatgaatttcatactgcgtgtctcaactcgtggttacttggaggaaaaactacttgtccagtt |
28030001 |
T |
|
| Q |
301 |
tgtcgccatgatttgttgtctaactgttaggcatgtaaaagttaagatctcattttctgtccnnnnnnnaatgtttaattagatctgtacatagtgaaca |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28030000 |
tgtcgccatgatttgttgtctaactattaggcatgtaaaagttaagatctcattttctgtcc-ttttttaatgtttaattagatctgtacatagtgaaca |
28029902 |
T |
|
| Q |
401 |
gctgaaagattagttttaaacatgtc |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28029901 |
gctgaaagattagttttaaacatgtc |
28029876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 455 - 554
Target Start/End: Complemental strand, 28029847 - 28029742
Alignment:
| Q |
455 |
ctatttgattaatgaaatccctctgtcgagaattttc------tcttcaagatttattgttgtacatattctgatatacctaacttgcatggactttcac |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28029847 |
ctatttgattaatgaaatccctctgtcgagaattttcattttctcttcaagatttattgttgtacatattctgatatacctaacttgcatggactttcac |
28029748 |
T |
|
| Q |
549 |
gtttca |
554 |
Q |
| |
|
|||||| |
|
|
| T |
28029747 |
gtttca |
28029742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 175 - 316
Target Start/End: Complemental strand, 33142288 - 33142145
Alignment:
| Q |
175 |
tgtcctatttgcatggatgaattcacaaaaggcgagatgattcaatcttttggagtgtg--tggccatgaatttcatactgcgtgtctcaactcgtggtt |
272 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| ||| |||||||| ||||||| || || || |||||||||||| | | || ||||| || ||||| |
|
|
| T |
33142288 |
tgtcctatttgcatggaagaatttactaaaggggagttgattcaaccttttggggtttgggtgctcatgaatttcattcatcatgcctcaattcttggtt |
33142189 |
T |
|
| Q |
273 |
acttggaggaaaaactacttgtccagtttgtcgccatgatttgt |
316 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| || ||||||| |
|
|
| T |
33142188 |
acttggaggaaaaacaacttgtccaatttgtcgtcaagatttgt |
33142145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 316
Target Start/End: Complemental strand, 33143538 - 33143337
Alignment:
| Q |
106 |
gagattgctaggtgtgcaataagagcattgccgccggttaaaagctttgatggtgacaaaaacactgactgtcctatttgcatggatgaattcacaaaag |
205 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||||||||||| || | ||| ||| ||| ||||||||||||||||| |||| | |||| |
|
|
| T |
33143538 |
gagattgctaggtgcacgataagagcgttgccgccggttaaaacctctaatgttga---------tgattgtcctatttgcatggaacaatttaagaaag |
33143448 |
T |
|
| Q |
206 |
gcgagatgattcaatcttttggagtgtgtggccatgaatttcatactgcgtgtctcaactcgtggttacttggaggaaaaactacttgtccagtttgtcg |
305 |
Q |
| |
|
| ||| |||||||| |||||| |||||| |||||||||||| | | || ||||| || ||||||||||| |||||||| ||||| || ||||| || |
|
|
| T |
33143447 |
gggagttgattcaaccttttgatttgtgtgttcatgaatttcattcctcttgcctcaattcttggttacttgggggaaaaacaacttgccccgtttgccg |
33143348 |
T |
|
| Q |
306 |
ccatgatttgt |
316 |
Q |
| |
|
|| ||||||| |
|
|
| T |
33143347 |
tcaagatttgt |
33143337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University