View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19715_high_3 (Length: 390)

Name: NF19715_high_3
Description: NF19715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19715_high_3
NF19715_high_3
[»] chr7 (3 HSPs)
chr7 (1-371)||(46847158-46847535)
chr7 (248-322)||(46658654-46658728)
chr7 (256-351)||(42011431-42011525)
[»] chr5 (3 HSPs)
chr5 (248-337)||(8204336-8204425)
chr5 (256-345)||(26305994-26306082)
chr5 (256-345)||(29538972-29539062)
[»] chr6 (3 HSPs)
chr6 (248-337)||(34051312-34051401)
chr6 (256-316)||(27336276-27336335)
chr6 (256-316)||(27397016-27397075)
[»] chr3 (4 HSPs)
chr3 (248-337)||(30319734-30319823)
chr3 (248-335)||(45245216-45245303)
chr3 (256-351)||(26250523-26250617)
chr3 (259-351)||(49016246-49016337)
[»] chr4 (4 HSPs)
chr4 (259-345)||(42477441-42477526)
chr4 (256-353)||(53409111-53409207)
chr4 (256-316)||(31417349-31417408)
chr4 (256-316)||(48512659-48512718)
[»] chr1 (1 HSPs)
chr1 (256-351)||(3154484-3154578)
[»] scaffold0006 (1 HSPs)
scaffold0006 (256-333)||(282194-282270)
[»] chr2 (1 HSPs)
chr2 (258-298)||(14185522-14185562)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 46847535 - 46847158
Alignment:
Q  1 tgtgcttgtgcttcacccttgtcttacgagaaaccatttttcacttttattttgtattgacaacatcgttgtactagttcatttgtctatgtcctcactc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  46847535 tgtgcttgtgcttcacccttgtcatacgagaaaccatttttcacttttattttgtattgacaacatcattgtactagttcatttgtctatctcctcactc 46847436  T
Q  101 acctcccttgtctcttctcctctcaagcgcagtagaatcagcatggcactattcgatgtgttgccggtcatgctctatgtgactaatggtgttgtttgaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  46847435 acctcccttgtctcttctcctctcaagcgcagtagaatcagcatggcactattcgatgtgtttccggtcatgttctatgtgactaatggtgttgtttgaa 46847336  T
Q  201 gcaagtcatgacatttaccatgaatgctttgttgcatggtgacattt-------accaatgaaagtattggtccatgatggaccaataattaaaaccatt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||    
T  46847335 gcaagtcatgacatttaccatgaatgctttgttgcatggtgacatttaggctggaccaatgaaagtattggtgcatgatggaccaataattaaaaccatt 46847236  T
Q  294 agattaatatgtaagcacaataatactatgcaccacacacatcttattatttcatttatttctttaaaatttgctcct 371  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46847235 aaattaatatgtaagcacaataatactatgcaccacacacatcttattatttcatttatttctttaaaatttgctcct 46847158  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 46658654 - 46658728
Alignment:
Q  248 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactat 322  Q
    |||||||||||||||||||||| ||||||||| |||||||  |||| |||||| |||||||||||||||||||||    
T  46658654 accaatgaaagtattggtccataatggaccaaaaattaaagtcattggattaacatgtaagcacaataatactat 46658728  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 42011525 - 42011431
Alignment:
Q  256 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 351  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||| ||||||| ||||||||| |  ||||||| | ||| ||| |||||||| ||||    
T  42011525 aagtattggtccataatggaccaatatttataaccattggatt-atatgtatgcacaataacataatgcacctctcacgtctaattatttctttta 42011431  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 8204336 - 8204425
Alignment:
Q  248 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 337  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| || || ||||||||    
T  8204336 accaatgaaagtattggtccatgatggaccaaaaattaaagccattagattaacatgtaagcacaataatactatacatcatacacatct 8204425  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 26305994 - 26306082
Alignment:
Q  256 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 345  Q
    |||||||||||||| ||||| ||||| ||| |  |||| ||||| |||||||||||||||| || ||  ||| ||||||||| |||||||    
T  26305994 aagtattggtccataatggatcaatatttatagtcattggatta-tatgtaagcacaataacacaatatacctcacacatctaattattt 26306082  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 29539062 - 29538972
Alignment:
Q  256 aagtattggtccatgatggaccaataatt--aaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 345  Q
    |||||||||||||| ||||||||||| ||  | | ||||| ||||| |||| ||||||||||| || || |||| ||||||||| |||||||    
T  29539062 aagtattggtccataatggaccaatatttttatagccattggatta-tatgcaagcacaataacacaatacacctcacacatctaattattt 29538972  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 34051312 - 34051401
Alignment:
Q  248 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 337  Q
    |||||||||||||||||||||||||||||||| |||||||  ||||||||||| |||||| |||||||| ||||| || |||||||||||    
T  34051312 accaatgaaagtattggtccatgatggaccaaaaattaaagtcattagattaacatgtaaacacaataacactatacatcacacacatct 34051401  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 27336335 - 27336276
Alignment:
Q  256 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 316  Q
    |||||||||| ||| ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  27336335 aagtattggttcataatggaccaatatttataaccattggatt-atatgtatgcacaataa 27336276  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 27397075 - 27397016
Alignment:
Q  256 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 316  Q
    |||||||||| ||| ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  27397075 aagtattggttcataatggaccaatatttataaccattggatt-atatgtatgcacaataa 27397016  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 30319734 - 30319823
Alignment:
Q  248 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 337  Q
    |||||||||||||||||||||| ||||||||  ||||||| |||||||||||| ||||||| ||||||| ||||| || |||||||||||    
T  30319734 accaatgaaagtattggtccataatggaccacaaattaaagccattagattaacatgtaagtacaataacactatacatcacacacatct 30319823  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 335
Target Start/End: Original strand, 45245216 - 45245303
Alignment:
Q  248 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacat 335  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||||  ||||||| ||||||| ||||| || |||||||||    
T  45245216 accaatgaaagtattggtccataatggaccaaaaattaaagccattagattagcatgtaagtacaataacactatacatcacacacat 45245303  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 26250523 - 26250617
Alignment:
Q  256 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 351  Q
    |||||||||||||| ||||||||||| ||| |||||||||||| |||| || |||||||||||  ||||||| ||||| ||| |||||||| ||||    
T  26250523 aagtattggtccataatggaccaatatttataaccattagatt-atatatatgcacaataatataatgcacctcacacgtctaattatttccttta 26250617  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 351
Target Start/End: Complemental strand, 49016337 - 49016246
Alignment:
Q  259 tattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 351  Q
    ||||||||||| ||| ||||||| ||| ||||||| ||||| |||||| ||||||||| |  ||||||| ||||| ||| |||||||||||||    
T  49016337 tattggtccataatgaaccaatatttataaccattggatta-tatgtatgcacaataacataatgcacctcacacgtctaattatttcattta 49016246  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 345
Target Start/End: Original strand, 42477441 - 42477526
Alignment:
Q  259 tattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 345  Q
    ||||||||||| ||||||||||| ||| ||||||| |||| |||| |||||||||||| || || |||| ||||||||| |||||||    
T  42477441 tattggtccataatggaccaatatttataaccattggatt-atatataagcacaataacacaatacacctcacacatctaattattt 42477526  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 53409111 - 53409207
Alignment:
Q  256 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcatttatt 353  Q
    ||||||||||| || ||||||||||| ||| ||||||| |||| |||| || ||||||||| |  ||||||| ||||| | | |||||||| ||||||    
T  53409111 aagtattggtctataatggaccaatatttataaccattggatt-atatatatgcacaataacataatgcacctcacacgtttaattatttcttttatt 53409207  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 31417408 - 31417349
Alignment:
Q  256 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 316  Q
    ||||||||||| || ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  31417408 aagtattggtctataatggaccaatatttataaccattggatt-atatgtatgcacaataa 31417349  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 48512659 - 48512718
Alignment:
Q  256 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 316  Q
    |||||||||||||| ||||||||||| ||| ||||||| || | ||||||| |||||||||    
T  48512659 aagtattggtccataatggaccaatatttataaccatt-gaattatatgtatgcacaataa 48512718  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 3154484 - 3154578
Alignment:
Q  256 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 351  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||| ||||||| ||||||||| |  ||||||| ||||| ||| |||||||| ||||    
T  3154484 aagtattggtccataatggaccaatatttataaccactggatt-atatgtatgcacaataacataatgcacctcacacgtctaattatttccttta 3154578  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 282194 - 282270
Alignment:
Q  256 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacac 333  Q
    |||||||||| ||| || |||||||| ||| |||||||||||| ||||||| |||||||||||  ||||||| |||||    
T  282194 aagtattggttcataatagaccaatatttataaccattagatt-atatgtatgcacaataatataatgcacctcacac 282270  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 14185522 - 14185562
Alignment:
Q  258 gtattggtccatgatggaccaataattaaaaccattagatt 298  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  14185522 gtattggtccatgatggaccaattatttcaaccattagatt 14185562  T

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