View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19715_high_8 (Length: 223)
Name: NF19715_high_8
Description: NF19715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19715_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 9847419 - 9847603
Alignment:
| Q |
20 |
taagaaacaacaaattgactaattttagaaattgttgaacaagtctatagattggggaggaggcgaaacaaaatttgaaggatttggcatgatgaaacta |
119 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
9847419 |
taagaaacaacaaattgtctgattttagaaattgttgaacaagtctatagatgggggaggaggcgaaacaccatatgaaggatttggcatgatgaaacta |
9847518 |
T |
|
| Q |
120 |
tttttcataaaatttctatcacttgaaagaactggactcaaatcattaatgaacttaatcatgtcgggatccaaaaacaatgacg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9847519 |
tttttcataaaatttctatcacttgaaagaactggactcaagtcattaatgaacttaatgatgtcgggatccaaaaacaatgacg |
9847603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University