View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19715_low_1 (Length: 581)

Name: NF19715_low_1
Description: NF19715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19715_low_1
NF19715_low_1
[»] chr7 (19 HSPs)
chr7 (1-361)||(22831824-22832182)
chr7 (357-569)||(22835144-22835356)
chr7 (120-227)||(22816243-22816350)
chr7 (355-569)||(22886610-22886824)
chr7 (129-223)||(22886423-22886524)
chr7 (1-90)||(22810454-22810543)
chr7 (121-227)||(22810585-22810690)
chr7 (35-97)||(22894792-22894854)
chr7 (42-97)||(22841490-22841545)
chr7 (120-175)||(22843080-22843135)
chr7 (1-91)||(22806109-22806199)
chr7 (131-211)||(22843134-22843214)
chr7 (33-87)||(22843005-22843059)
chr7 (1-100)||(22859161-22859261)
chr7 (35-100)||(22816032-22816095)
chr7 (120-177)||(22874013-22874070)
chr7 (33-98)||(22886331-22886396)
chr7 (37-97)||(22899055-22899113)
chr7 (37-97)||(22840890-22840950)
[»] chr1 (3 HSPs)
chr1 (5-96)||(21149819-21149910)
chr1 (382-514)||(35877111-35877242)
chr1 (350-419)||(897241-897310)
[»] chr5 (1 HSPs)
chr5 (276-513)||(4523922-4524154)
[»] chr4 (1 HSPs)
chr4 (341-422)||(52934488-52934570)
[»] scaffold0533 (1 HSPs)
scaffold0533 (356-446)||(3152-3242)
[»] chr8 (1 HSPs)
chr8 (282-324)||(42447348-42447390)
[»] chr3 (1 HSPs)
chr3 (464-514)||(29675556-29675606)
[»] chr2 (1 HSPs)
chr2 (464-509)||(35984842-35984887)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 22831824 - 22832182
Alignment:
Q  1 tgtagtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattcttaaa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22831824 tgtagttgtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattcttaaa 22831923  T
Q  101 -gtgnnnnnnnnnnnnnccttttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaa 199  Q
     |||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22831924 agtgttttttttttt---cttttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaa 22832020  T
Q  200 ggataaaaagatatatgtttgttttgacatagtcacctcatctctaaatataagacgatttataagagaaaatgtatgtccttaaatataagactcacta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  22832021 ggataaaaagatatatgtttgttttgacatagtcacctcatctctaaatataagacgatttataaaagaaaatgtatgtccttaaatacaagactcacta 22832120  T
Q  300 caaattactaaatgcatttgttatttttcttcttctttctaatatacccctattaatactat 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22832121 caaattactaaatgcatttgttatttttcttcttctttctaatatacccctattaatactat 22832182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 357 - 569
Target Start/End: Original strand, 22835144 - 22835356
Alignment:
Q  357 actatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttac 456  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  22835144 actataaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatatagcaatagatacatacatttcagataaaaattttac 22835243  T
Q  457 tccaaagacttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacgaaggaaannnnnnncttcttgcaaaaatcgaggcgaaatttc 556  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||    
T  22835244 tccaaagacttttcttaagacacgtgatttttgtaaagtgttcttataaaaaaggatgaaggaaatttttttcttcttgcaaaaatcgaggcgaaatttc 22835343  T
Q  557 gagccacaggttc 569  Q
    |||||||| ||||    
T  22835344 gagccacatgttc 22835356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 22816243 - 22816350
Alignment:
Q  120 tttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgttt 219  Q
    ||||| |||||||||||||| ||||||   ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||      
T  22816243 tttcacacttgaatgtgtggccttgacctattactattgattatgctgcaaataaaatgatgaattaatacgtggtggaaggataaaaagatataagtgg 22816342  T
Q  220 gttttgac 227  Q
    ||||||||    
T  22816343 gttttgac 22816350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 355 - 569
Target Start/End: Original strand, 22886610 - 22886824
Alignment:
Q  355 atactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaattt 454  Q
    ||||||||||||||||  |||| ||| ||| |||| ||||||| |||| |||| |||||||||||||| || ||  ||| |||||||||| |||    ||    
T  22886610 atactatcaatttatctaagaatatgaaaattaactttgaatgcacttttataaaaagggtaatttagaaatagtaacacacatttcagacaaatttatt 22886709  T
Q  455 actccaaagacttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacgaaggaaannnnnnncttcttgcaaaaatcgaggcgaaatt 554  Q
    |||| |||||||||| ||| ||| ||||| ||||||||||||||||| |||||||||| | ||| ||       |||| ||||||||||  || ||||||    
T  22886710 actcgaaagactttttttagtacccgtgatttttgtaaagtgttcttctaaaaaaggatggagggaaaatttttcttcatgcaaaaatcatggtgaaatt 22886809  T
Q  555 tcgagccacaggttc 569  Q
    |||||||||| ||||    
T  22886810 tcgagccacatgttc 22886824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 22886423 - 22886524
Alignment:
Q  129 tgaatgtgtggacttgacaagttactatt-------gattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgtttgt 221  Q
    |||||||||||||||||| ||||||||||       ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  22886423 tgaatgtgtggacttgaccagttactattgattattgattatgcttcaaatcaaatgatgaatgaatatgtggtggaaagataaaaagatatatgttggt 22886522  T
Q  222 tt 223  Q
    ||    
T  22886523 tt 22886524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 22810454 - 22810543
Alignment:
Q  1 tgtagtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtcta 90  Q
    |||||||| |||||||| ||||||||||| | ||||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||    
T  22810454 tgtagtagcgggggaatgtttttcaacgtttacatattaagtgttcgatgctaaattgaatatgtgaaattaaatcatcaaagtcgtcta 22810543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 22810585 - 22810690
Alignment:
Q  121 ttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgtttg 220  Q
    |||| |||||||| |||| |||| |  |||||||||||||| |||||||||| ||||||| |||||||| ||||| ||||||| |||||||||||||| |    
T  22810585 ttcacacttgaatatgtgcactttagcagttactattgattttgctgcaaataaaatgattaatgaatacgtggttgaaggat-aaaagatatatgttgg 22810683  T
Q  221 ttttgac 227  Q
    |||||||    
T  22810684 ttttgac 22810690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 22894792 - 22894854
Alignment:
Q  35 tattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctt 97  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  22894792 tattgagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttctt 22894854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 22841490 - 22841545
Alignment:
Q  42 tgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctt 97  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  22841490 tgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttctt 22841545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 22843080 - 22843135
Alignment:
Q  120 tttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaa 175  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22843080 tttcacacttgaatgtgtggacttgaccagttactattgattatgctgcaaatcaa 22843135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 22806109 - 22806199
Alignment:
Q  1 tgtagtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaa 91  Q
    ||||||||||||  ||| |||||||| || | ||||||||||||||||||||||||||||| |||||||| || |||||| ||| ||||||    
T  22806109 tgtagtagtgggtaaatgtttttcaatgtttacatattaagtgtttgatgctaaattgaatatgtgaaatcaagacatcagtgttgtctaa 22806199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 22843134 - 22843214
Alignment:
Q  131 aatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagat 211  Q
    |||||||||| ||| |  ||||| |||||||||||||||||| |||||||||||||||| || |||||| |||||||||||    
T  22843134 aatgtgtggaattggccggttaccattgattatgctgcaaataaaatgatgaatgaatacgttgtggaaagataaaaagat 22843214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 22843005 - 22843059
Alignment:
Q  33 catattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgt 87  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  22843005 catattaagtgtttgatgctaaattgaatatgtgaaatcaaaacatctatgtcgt 22843059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 22859161 - 22859261
Alignment:
Q  1 tgtagtagtgggggaatatttttcaacgtattcatatt--aagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctta 98  Q
    ||||||||||||||||| ||||||||||| |  |||||  |||| || ||||| ||||||||| |||||||||||||||| ||||| |||||| ||||||    
T  22859161 tgtagtagtgggggaatgtttttcaacgtttatatattcgaagtctt-gatgcaaaattgaatatgtgaaattaaaacattaatgttgtctaatttctta 22859259  T
Q  99 aa 100  Q
    ||    
T  22859260 aa 22859261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 22816032 - 22816095
Alignment:
Q  35 tattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattcttaaa 100  Q
    ||||||||||||||||||||||||||  | |||||||||||||||| |||| ||||| ||||||||    
T  22816032 tattaagtgtttgatgctaaattgaa--tatgaaattaaaacatcagtgtcatctaatttcttaaa 22816095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 22874013 - 22874070
Alignment:
Q  120 tttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaat 177  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||| |||| ||||    
T  22874013 tttcacacttgaatgtgtggacttgaccggttactattgattatgctgtaaataaaat 22874070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 22886331 - 22886396
Alignment:
Q  33 catattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctta 98  Q
    ||||||||||||||||||||||||||||| ||||||||| ||  ||||||||  ||||| ||||||    
T  22886331 catattaagtgtttgatgctaaattgaatatgtgaaatttaattatcaatgtgttctaatttctta 22886396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 22899055 - 22899113
Alignment:
Q  37 ttaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctt 97  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||| ||||||    
T  22899055 ttaagtgtttgat-ctaaattgaatatgtgaaatt-aaacatcaatgtcatctatattctt 22899113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 22840890 - 22840950
Alignment:
Q  37 ttaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctt 97  Q
    |||| |||||||||| ||| ||||| | ||||||||||||||||||||  ||||| |||||    
T  22840890 ttaaatgtttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttctt 22840950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 21149910 - 21149819
Alignment:
Q  5 gtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattct 96  Q
    |||||||| |||| |||||||| || | | | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  21149910 gtagtgggtgaatgtttttcaatgtttacgtgttaagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttct 21149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 514
Target Start/End: Original strand, 35877111 - 35877242
Alignment:
Q  382 aaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttactccaaagacttttcttaatacacgt 481  Q
    |||||||||||||||||| |||||||||||||||||| ||| || || || | |||||| ||| |||    | ||||||   |||||| |||||||  ||    
T  35877111 aaaataacattgaatgtatttatatacaaagggtaatctagtaatagttatacacattttagacaaatttatcactccagcaacttttattaatacctgt 35877210  T
Q  482 gacttttgtaaagtgttcttataaaaaaggacg 514  Q
     | |||||||||||||||||||||||| |||||    
T  35877211 -atttttgtaaagtgttcttataaaaagggacg 35877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 419
Target Start/End: Complemental strand, 897310 - 897241
Alignment:
Q  350 tattaatactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatt 419  Q
    ||||||||||||| ||||||| | ||| ||| ||| ||||||| |||||| |||| ||||||| ||||||    
T  897310 tattaatactatctatttatcttggaatatgaaaagtaacattaaatgtatttatgtacaaagagtaatt 897241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 513
Target Start/End: Original strand, 4523922 - 4524154
Alignment:
Q  276 tgtccttaaatataagactcactacaaattactaaatgcatttgttatttttcttcttctttctaatatacccct-attaatactatcaatttatcatag 374  Q
    ||||| |||||||||||||| ||||||||||||| |||||||| | | | || |||      | | ||||||||| |||||||| ||| | ||||| | |    
T  4523922 tgtccctaaatataagactcgctacaaattactagatgcatttatcactctttttc------caattataccccttattaataccatctaattatcttgg 4524015  T
Q  375 aaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttactccaaagacttttcttaa 474  Q
    || |||  || ||| |||||||| | |||| |||||||| |||||||| || ||  ||| |||||||||| |||    |||||||||  |||||||||||    
T  4524016 aatatgataagtaatattgaatgcatttatctacaaaggataatttagtaatagtcacacacatttcagacaaatttattactccaacaacttttcttaa 4524115  T
Q  475 tacacgtgacttttgtaaagtgttcttataaaaaaggac 513  Q
    ||| ||||  |||| || ||||||||||| |||| ||||    
T  4524116 tacccgtgttttttttagagtgttcttattaaaagggac 4524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 422
Target Start/End: Complemental strand, 52934570 - 52934488
Alignment:
Q  341 atatacccct-attaatactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttag 422  Q
    |||||||||| |||||||| ||||||| ||| | ||| ||| ||| |||||||||||||| ||||| ||||||| ||||||||    
T  52934570 atataccccttattaatacaatcaattcatcttggaatatgaaaagtaacattgaatgtatttataaacaaaggataatttag 52934488  T

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Target: scaffold0533 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 446
Target Start/End: Complemental strand, 3242 - 3152
Alignment:
Q  356 tactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagata 446  Q
    |||||| |||||||| |  || ||| ||||||||||| ||| || ||||| ||||| | |||||||| ||||||  |||||||||||||||    
T  3242 tactattaatttatcttgaaatatgaaaaataacattaaatatatttatacacaaatgataatttagtaacagacgcatacatttcagata 3152  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 42447348 - 42447390
Alignment:
Q  282 taaatataagactcactacaaattactaaatgcatttgttatt 324  Q
    ||||||||||||||| |||||||||||| |||||||| |||||    
T  42447348 taaatataagactcattacaaattactagatgcatttattatt 42447390  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 514
Target Start/End: Complemental strand, 29675606 - 29675556
Alignment:
Q  464 acttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacg 514  Q
    |||||||||||||| ||||| |||||||||||  ||||||||||| |||||    
T  29675606 acttttcttaatactcgtgatttttgtaaagtaatcttataaaaagggacg 29675556  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 509
Target Start/End: Complemental strand, 35984887 - 35984842
Alignment:
Q  464 acttttcttaatacacgtgacttttgtaaagtgttcttataaaaaa 509  Q
    |||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  35984887 acttatcttaatacccgtgatttttgtaaagtgttctaataaaaaa 35984842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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