View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19715_low_5 (Length: 367)

Name: NF19715_low_5
Description: NF19715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19715_low_5
NF19715_low_5
[»] chr4 (5 HSPs)
chr4 (138-356)||(51237998-51238208)
chr4 (20-73)||(51238273-51238326)
chr4 (304-356)||(32754621-32754673)
chr4 (304-342)||(27131685-27131723)
chr4 (301-333)||(23817990-23818022)
[»] chr8 (4 HSPs)
chr8 (302-337)||(16852082-16852117)
chr8 (304-334)||(3731771-3731801)
chr8 (304-337)||(30585118-30585151)
chr8 (263-291)||(21465389-21465417)
[»] chr7 (4 HSPs)
chr7 (305-336)||(6969094-6969125)
chr7 (304-334)||(2754293-2754323)
chr7 (305-346)||(44124326-44124367)
chr7 (304-336)||(1741087-1741119)
[»] chr5 (2 HSPs)
chr5 (304-347)||(29587689-29587732)
chr5 (304-337)||(28735830-28735863)
[»] chr1 (6 HSPs)
chr1 (303-342)||(16567302-16567341)
chr1 (308-342)||(2445460-2445494)
chr1 (304-334)||(20262162-20262192)
chr1 (307-347)||(28073896-28073936)
chr1 (258-290)||(30749800-30749832)
chr1 (258-290)||(30771251-30771283)
[»] scaffold0576 (1 HSPs)
scaffold0576 (304-334)||(2213-2243)
[»] chr6 (4 HSPs)
chr6 (304-342)||(2468485-2468523)
chr6 (304-334)||(15357224-15357254)
chr6 (304-337)||(10338618-10338651)
chr6 (305-337)||(34406440-34406472)
[»] chr2 (4 HSPs)
chr2 (304-334)||(28655994-28656024)
chr2 (304-337)||(15804120-15804153)
chr2 (304-337)||(22556247-22556280)
chr2 (306-342)||(5453721-5453757)
[»] chr3 (1 HSPs)
chr3 (304-337)||(31652457-31652490)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 138 - 356
Target Start/End: Complemental strand, 51238208 - 51237998
Alignment:
Q  138 tacaaagaggtagttcggttcttcattgatacaatcacaaacaaacttgttcacatgcattacatttttccgaaattttcacaaccatttcattttcact 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51238208 tacaaagaggtagttcggttcttcattgatacaatcacaaacaaacttgttcacatgcattacatttttccgaaattttcacaaccatttcattttcact 51238109  T
Q  238 tattagctacgaaacattgacatgtatacggacaccggacacgacacggacacacagactcttcacaataatttaagaaaatggaagtgattgaatgtaa 337  Q
    ||||||||||||||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51238108 tattagctacgaaacattgacatgtatacggacgccggacacg--------acacagactcttcacaataatttaagaaaatggaagtgattgaatgtaa 51238017  T
Q  338 gcacacatgttagtttcat 356  Q
    |||||||||||||||||||    
T  51238016 gcacacatgttagtttcat 51237998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 51238326 - 51238273
Alignment:
Q  20 gccttatctcttcaaatgcacacaatgtttctgagtccaaacctccagcaaact 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51238326 gccttatctcttcaaatgcacacaatgtttctgagtccaaacctccagcaaact 51238273  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 32754621 - 32754673
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgtaagcacacatgttagtttcat 356  Q
    |||| |||||||||||| |||||||||||||||| ||||||||| ||| ||||    
T  32754621 aatagtttaagaaaatgaaagtgattgaatgtaaccacacatgtcagtatcat 32754673  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 27131723 - 27131685
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgtaagcaca 342  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  27131723 aataatttaagaaaatggaagtaattgaatgtaaccaca 27131685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 23818022 - 23817990
Alignment:
Q  301 cacaataatttaagaaaatggaagtgattgaat 333  Q
    |||||||||||||||||||| ||||||||||||    
T  23818022 cacaataatttaagaaaatgaaagtgattgaat 23817990  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 16852082 - 16852117
Alignment:
Q  302 acaataatttaagaaaatggaagtgattgaatgtaa 337  Q
    ||||||||||||||||||| ||||||||||||||||    
T  16852082 acaataatttaagaaaatgtaagtgattgaatgtaa 16852117  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 3731771 - 3731801
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatg 334  Q
    |||||||||||||||||||||||||||||||    
T  3731771 aataatttaagaaaatggaagtgattgaatg 3731801  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 30585151 - 30585118
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgtaa 337  Q
    ||||||||||||||||| ||||||||||||||||    
T  30585151 aataatttaagaaaatgaaagtgattgaatgtaa 30585118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 21465389 - 21465417
Alignment:
Q  263 atacggacaccggacacgacacggacaca 291  Q
    |||||||||||||||||||||||||||||    
T  21465389 atacggacaccggacacgacacggacaca 21465417  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 6969125 - 6969094
Alignment:
Q  305 ataatttaagaaaatggaagtgattgaatgta 336  Q
    ||||||||||||||||||||||||||||||||    
T  6969125 ataatttaagaaaatggaagtgattgaatgta 6969094  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Complemental strand, 2754323 - 2754293
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatg 334  Q
    |||||||||||||||||||||||||||||||    
T  2754323 aataatttaagaaaatggaagtgattgaatg 2754293  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 44124326 - 44124367
Alignment:
Q  305 ataatttaagaaaatggaagtgattgaatgtaagcacacatg 346  Q
    ||||||| || |||||||||||||||||||||| ||||||||    
T  44124326 ataatttgaggaaatggaagtgattgaatgtaaccacacatg 44124367  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 1741087 - 1741119
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgta 336  Q
    ||||||||| |||||||||||||||||||||||    
T  1741087 aataatttatgaaaatggaagtgattgaatgta 1741119  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 29587689 - 29587732
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgtaagcacacatgt 347  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||    
T  29587689 aataatttaagaaaatggaagtgattaaatgtaaccacatatgt 29587732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 28735863 - 28735830
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgtaa 337  Q
    |||||||||||||||| |||||||||||||||||    
T  28735863 aataatttaagaaaatagaagtgattgaatgtaa 28735830  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 16567302 - 16567341
Alignment:
Q  303 caataatttaagaaaatggaagtgattgaatgtaagcaca 342  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  16567302 caataatttaagaaaatggaaatgattgaatgtaaccaca 16567341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 2445494 - 2445460
Alignment:
Q  308 atttaagaaaatggaagtgattgaatgtaagcaca 342  Q
    |||||||||||||||||||||||||||||| ||||    
T  2445494 atttaagaaaatggaagtgattgaatgtaatcaca 2445460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 20262162 - 20262192
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatg 334  Q
    |||||||||||||||||||||||||||||||    
T  20262162 aataatttaagaaaatggaagtgattgaatg 20262192  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 28073896 - 28073936
Alignment:
Q  307 aatttaagaaaatggaagtgattgaatgtaagcacacatgt 347  Q
    ||||| ||||||||||||||||||||||||| | |||||||    
T  28073896 aatttgagaaaatggaagtgattgaatgtaaccccacatgt 28073936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 30749800 - 30749832
Alignment:
Q  258 catgtatacggacaccggacacgacacggacac 290  Q
    |||| ||||||||||||||||||||||||||||    
T  30749800 catggatacggacaccggacacgacacggacac 30749832  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 30771251 - 30771283
Alignment:
Q  258 catgtatacggacaccggacacgacacggacac 290  Q
    |||| ||||||||||||||||||||||||||||    
T  30771251 catggatacggacaccggacacgacacggacac 30771283  T

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Target: scaffold0576 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 2213 - 2243
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatg 334  Q
    |||||||||||||||||||||||||||||||    
T  2213 aataatttaagaaaatggaagtgattgaatg 2243  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 2468523 - 2468485
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgtaagcaca 342  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  2468523 aataatttaagaaaatggaagtaattgaatgtaaccaca 2468485  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 15357224 - 15357254
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatg 334  Q
    |||||||||||||||||||||||||||||||    
T  15357224 aataatttaagaaaatggaagtgattgaatg 15357254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 10338618 - 10338651
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgtaa 337  Q
    |||||||||||||||| |||||||||||||||||    
T  10338618 aataatttaagaaaatagaagtgattgaatgtaa 10338651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 34406440 - 34406472
Alignment:
Q  305 ataatttaagaaaatggaagtgattgaatgtaa 337  Q
    |||||||||||||||| ||||||||||||||||    
T  34406440 ataatttaagaaaatgaaagtgattgaatgtaa 34406472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 28655994 - 28656024
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatg 334  Q
    |||||||||||||||||||||||||||||||    
T  28655994 aataatttaagaaaatggaagtgattgaatg 28656024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 15804153 - 15804120
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgtaa 337  Q
    |||||||| |||||||||||||||||||||||||    
T  15804153 aataatttgagaaaatggaagtgattgaatgtaa 15804120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 22556247 - 22556280
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgtaa 337  Q
    |||||||||||||||| |||||||||||||||||    
T  22556247 aataatttaagaaaatagaagtgattgaatgtaa 22556280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 5453721 - 5453757
Alignment:
Q  306 taatttaagaaaatggaagtgattgaatgtaagcaca 342  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  5453721 taatttaagaaaatggaagtgattgaatataaccaca 5453757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 31652457 - 31652490
Alignment:
Q  304 aataatttaagaaaatggaagtgattgaatgtaa 337  Q
    |||||||||||||||| |||||||||||||||||    
T  31652457 aataatttaagaaaatagaagtgattgaatgtaa 31652490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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