View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19715_low_6 (Length: 332)
Name: NF19715_low_6
Description: NF19715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19715_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 47181556 - 47181255
Alignment:
| Q |
18 |
agtccacttcacctacaatggctacaaatttctcataaaagaaattacaaagattgtgaaatacggatatattgtccatgatggtgccttaggagttacg |
117 |
Q |
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| T |
47181556 |
agtccacttcacctacaatggctacaaatttttcataaaagaaattacaaagattgtgaaatacggatatattgtccatgatggtgccttaggagttacg |
47181457 |
T |
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| Q |
118 |
ttacgtcacaaagaaagcggaaaagtaagtagtagattgttactcacctccaaatcctacccgtccgtatattgatgtgtggaaggactacaaaaacaaa |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47181456 |
ttacgtcacaaagaaagcgcaaaagtaagtagtagattgttactcacctccaaatcctacccgtccgtatattgatgtgtggaaggactacaaaaacaaa |
47181357 |
T |
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| Q |
218 |
tggttttgtattgtaaattgtgaaattgagttataccaagtagtttgacttgaaaatgagagtgcaaagataagaagaaggagatctcactttcgtttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47181356 |
tggttttgtattgtaaattgtgaaattgagttataccaagtagtttgacttgaaaatgagagtgcaaagataagaagaaggagatctcactttcttttct |
47181257 |
T |
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| Q |
318 |
tc |
319 |
Q |
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|| |
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| T |
47181256 |
tc |
47181255 |
T |
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