View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19715_low_8 (Length: 298)
Name: NF19715_low_8
Description: NF19715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19715_low_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 2562840 - 2563118
Alignment:
| Q |
20 |
attatgtgtattatatatctttggcaggtgaatttggttggaggatactatgatgctggtgataatgtaaagtttggatggccaatgtcatttacagtca |
119 |
Q |
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| T |
2562840 |
attatgtgtattatatatctttggcaggtgaatttggttggaggatactatgatgctggtgataatgtaaagtttggatggccaatgtcatttacagtca |
2562939 |
T |
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| Q |
120 |
gcttattgagttgggctgctgttgaatatgaaagtgagatttcttcagttaaccagattgattatctccgccgtgctattcgttggggtacaaattacat |
219 |
Q |
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| T |
2562940 |
gcttattgagttgggctgctgttgaatatgaaagtgagatttcttcagttaaccagattggttatctccgccgtgctattcgttggggtacaaatttcat |
2563039 |
T |
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| Q |
220 |
acttcaatctcacacttctccaatcacgctcttcacacaggtatgtttctatgaccctgtatggataaacaacttaatt |
298 |
Q |
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| T |
2563040 |
acttcaatctcacacttctccaatcacgctcttcacacaggtatgtttctatgaccctgtatggataaacaacttaatt |
2563118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 2572821 - 2573064
Alignment:
| Q |
18 |
caattatgtgtattatatatctttggcaggtgaatttggttggaggatactatgatgctggtgataatgtaaagtttggatggccaatgtcatttacagt |
117 |
Q |
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| T |
2572821 |
caatcatgtgtattatatatttttggcaggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttggatggccgatgtcatttacagt |
2572920 |
T |
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| Q |
118 |
cagcttattgagttgggctgctgttgaatatgaaagtgagatttcttcagttaaccagattgattatctccgccgtgctattcgttggggtacaaattac |
217 |
Q |
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| T |
2572921 |
gagcttgttgagttgggctgctgttgaatatgaaagtgagatttcttctgcgaaccagcttgattatctccgcagtgctattcgttggggtgcagatttc |
2573020 |
T |
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| Q |
218 |
atacttcaatctcacacttctccaatcacgctcttcacacaggt |
261 |
Q |
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| T |
2573021 |
atacttaaagctcacacttccccaaccacgctctttacacaggt |
2573064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 39419635 - 39419590
Alignment:
| Q |
51 |
atttggttggaggatactatgatgctggtgataatgtaaagtttgg |
96 |
Q |
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| T |
39419635 |
atttggttggagggtattatgatgctggtgacaatgtcaagtttgg |
39419590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 36272856 - 36272788
Alignment:
| Q |
51 |
atttggttggaggatactatgatgctggtgataatgtaaagtttggatggccaatgtcatttacagtca |
119 |
Q |
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| T |
36272856 |
atttggttggagggtactatgatgcaggtgatcatgtgaaatttggtttaccaatggcatttactgtca |
36272788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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