View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19715_low_9 (Length: 258)

Name: NF19715_low_9
Description: NF19715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19715_low_9
NF19715_low_9
[»] chr2 (4 HSPs)
chr2 (65-204)||(41784549-41784696)
chr2 (1-33)||(41784489-41784521)
chr2 (217-256)||(21603954-21603993)
chr2 (217-256)||(37358058-37358097)
[»] chr8 (2 HSPs)
chr8 (217-258)||(41179698-41179739)
chr8 (218-258)||(11254162-11254202)
[»] chr7 (3 HSPs)
chr7 (217-256)||(35341531-35341570)
chr7 (217-258)||(48250149-48250190)
chr7 (218-248)||(48072385-48072415)
[»] chr4 (4 HSPs)
chr4 (217-258)||(34829218-34829259)
chr4 (217-258)||(55590477-55590518)
chr4 (217-258)||(21260789-21260830)
chr4 (220-256)||(35869708-35869744)
[»] scaffold0032 (1 HSPs)
scaffold0032 (217-257)||(34189-34229)
[»] chr5 (1 HSPs)
chr5 (217-256)||(9827783-9827822)
[»] chr3 (1 HSPs)
chr3 (217-256)||(44380249-44380288)
[»] chr1 (2 HSPs)
chr1 (217-256)||(32676131-32676170)
chr1 (222-258)||(2569037-2569073)
[»] scaffold0519 (1 HSPs)
scaffold0519 (218-258)||(11191-11231)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 41784549 - 41784696
Alignment:
Q  65 tggttggttgctgaatcaaatggaatgtctagttttccacttttaatattcaaatctttttatgattttttgtctctaaaattccactctg-------tt 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  41784549 tggttggttgctgaatcaaatggaatgtctagttttccacttttaatattcaaatctttttatgattttttgtctctaaaattccactctgtttctactt 41784648  T
Q  158 tctaggatttcttcctgtttgtc-tttaaggatattaacatgattttt 204  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  41784649 tctaggatttcttcctgtttgtcttttaaggatattagcatgattttt 41784696  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41784489 - 41784521
Alignment:
Q  1 cagaatcaaccaaaaagaaaggtaacgtggatt 33  Q
    |||||||||||||||||||||||||||||||||    
T  41784489 cagaatcaaccaaaaagaaaggtaacgtggatt 41784521  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 21603954 - 21603993
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatata 256  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  21603954 ggattccacttgtgtaccattaaggtaccaatggtatata 21603993  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 37358097 - 37358058
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatata 256  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatata 37358058  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 41179739 - 41179698
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatatatc 258  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatc 41179698  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 11254202 - 11254162
Alignment:
Q  218 gattccacttgtgtactattaaggtaccaatgatatatatc 258  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  11254202 gattccacttgtgtaccattaaattaccaatgatatatatc 11254162  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 35341531 - 35341570
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatata 256  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  35341531 ggattccacttgtgtaccattaaggtaccaatgatatata 35341570  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 48250149 - 48250190
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatatatc 258  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  48250149 ggataccacttgtgtaccattaaggtaccaatgatatatatc 48250190  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 48072385 - 48072415
Alignment:
Q  218 gattccacttgtgtactattaaggtaccaat 248  Q
    |||||||||||||||||||||||||||||||    
T  48072385 gattccacttgtgtactattaaggtaccaat 48072415  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 34829259 - 34829218
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatatatc 258  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  34829259 ggatttcacttatgtactattaaggtaccaatgatatatatc 34829218  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 55590477 - 55590518
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatatatc 258  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatc 55590518  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 21260789 - 21260830
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatatatc 258  Q
    ||||||||||| | ||| ||||||||||||||||||||||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatc 21260830  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 35869744 - 35869708
Alignment:
Q  220 ttccacttgtgtactattaaggtaccaatgatatata 256  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  35869744 ttccacttgtgtaccattaaggtaccaatggtatata 35869708  T

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Target: scaffold0032 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 34189 - 34229
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatatat 257  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatat 34229  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 9827783 - 9827822
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatata 256  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  9827783 ggattccacttgtgtaccattaaggtaccaatggtatata 9827822  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 44380249 - 44380288
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatata 256  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  44380249 ggattccacttgtgtaccattaaggtaccaatggtatata 44380288  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 32676131 - 32676170
Alignment:
Q  217 ggattccacttgtgtactattaaggtaccaatgatatata 256  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  32676131 ggattccacttgtgtaccattaaggtaccaatggtatata 32676170  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 2569037 - 2569073
Alignment:
Q  222 ccacttgtgtactattaaggtaccaatgatatatatc 258  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatc 2569073  T

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Target: scaffold0519 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 11191 - 11231
Alignment:
Q  218 gattccacttgtgtactattaaggtaccaatgatatatatc 258  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  11191 gattccacttgtgtaccattaaattaccaatgatatatatc 11231  T

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