View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19716_high_1 (Length: 782)
Name: NF19716_high_1
Description: NF19716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19716_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 745; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 18 - 782
Target Start/End: Original strand, 10561608 - 10562372
Alignment:
| Q |
18 |
aaggaatccattaaatgttgacaaggataaatttccttgagctccttcggcgaggagtaaccgtattttttaaagtcaatggaacgttttgcatgaagaa |
117 |
Q |
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| T |
10561608 |
aaggaatccattaaatgttgacaaggataaatttccttgagctccttcggcgaggagtaaccgtattttttaaaatcaatggaacgttttgcatgaagaa |
10561707 |
T |
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| Q |
118 |
atgtttctatatcaaaacctaacttgtcaacaattgagattctatctatgagatcactgtcagattgtgctctcttcatttgtgtgcgctcatcaagcca |
217 |
Q |
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| T |
10561708 |
atgtttctatatcaaaacctaacttgtcaacaattgagattctatctatgatatcactgtcagattgtgctctcttcatttgtgtgcgctcatcaagcca |
10561807 |
T |
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| Q |
218 |
accttctgaaatatgaaggattagccgatcaacattcttcccttcaaggtaaccattctcagaattctgcctaagacaatgaactttttgttcataattt |
317 |
Q |
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| T |
10561808 |
accttctgaaatatgaaggattagccgatcaacattctccccttcaaggtaaccattctcagaattctgcctaagacaatgaactttttgttcataattt |
10561907 |
T |
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| Q |
318 |
tttattcctttggcaaactcgtcgcacaaattctccaaaagtattcgtgcttttctctcttgttcaaggtttctcaaacaactagagaatgaagatttta |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10561908 |
tttattcctttggcaaactcgtcgcacaaattctccaaaagtatttgtgcttttctctcttgttcaaggtttctcaaacaactagagaatgaagatttta |
10562007 |
T |
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| Q |
418 |
cttcagaaagctcacaagcaagcctctgttgcaagctttcagagtgctttcgtagccttctctcatcttctagctcttctttaagtgattgtacctcagt |
517 |
Q |
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| T |
10562008 |
cttcagaaagctcacaagcaagcctctgttgcaagctttcagagtgctttcgtagccttctctcatcttctagctcttctttaagtgattgtacctcagt |
10562107 |
T |
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| Q |
518 |
ttgaattctatcatgttctttattcttcctaacaaatttttcaattgtcatttgcttcattaatttctccatttcctgtctgttcatttgtttctctcgt |
617 |
Q |
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| T |
10562108 |
ttgaattctatcatgttctttattcttcctaacaaatttttcaattgtcatttgcttcattaatttctccatttcctgtctgttcatttgtttctctcgt |
10562207 |
T |
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| Q |
618 |
attaactccttcatctgtgttcgagagcgatttagttccgtttttaaggctttcactgctgatatatttgatgcatgttgttcttctagactccatatcc |
717 |
Q |
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| T |
10562208 |
attaactccttcatctgtgttcgagagcgatttagttccgtttttaaggctttcactgctgatatatttgatgcatgttgttcttctagactccatatcc |
10562307 |
T |
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| Q |
718 |
ggttaagtacattaagtacttcctttgatgttgtaaggttgtaccttgactcttcagttatacct |
782 |
Q |
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| T |
10562308 |
ggttaagtacattaagtacttcctttgatgttgcaaggttgtaccttgactcttcagttatacct |
10562372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 48234363 - 48234311
Alignment:
| Q |
102 |
cgttttgcatgaagaaatgtttctatatcaaaacctaacttgtcaacaattga |
154 |
Q |
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| T |
48234363 |
cgttttgcatgaagaaatgtttcaatatcaatgcgtaacttgtcaactattga |
48234311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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