View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19716_high_2 (Length: 646)
Name: NF19716_high_2
Description: NF19716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19716_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 18 - 636
Target Start/End: Original strand, 10561608 - 10562226
Alignment:
| Q |
18 |
aaggaatccattaaatgttgacaaggataaatttccttgagctccttcggcgaggagtaaccgtattttttaaagtcaatggaacgttttgcatgaagaa |
117 |
Q |
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| T |
10561608 |
aaggaatccattaaatgttgacaaggataaatttccttgagctccttcggcgaggagtaaccgtattttttaaaatcaatggaacgttttgcatgaagaa |
10561707 |
T |
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| Q |
118 |
atgtttctatatcaaaacctaacttgtcaacaattgagattctatctatgagatcactgtcagattgtgctctcttcatttgtgtgcgctcatcaagcca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10561708 |
atgtttctatatcaaaacctaacttgtcaacaattgagattctatctatgatatcactgtcagattgtgctctcttcatttgtgtgcgctcatcaagcca |
10561807 |
T |
|
| Q |
218 |
accttctgaaatatgaaggattagccgatcaacattcttcccttcaaggtaaccattctcagaattctgcctaagacaatgaactttttgttcataattt |
317 |
Q |
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| T |
10561808 |
accttctgaaatatgaaggattagccgatcaacattctccccttcaaggtaaccattctcagaattctgcctaagacaatgaactttttgttcataattt |
10561907 |
T |
|
| Q |
318 |
tttattcctttggcaaactcgtcgcacaaattctccaaaagtattcgtgcttttctctcttgttcaaggtttctcaaacaactagagaatgaagatttta |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10561908 |
tttattcctttggcaaactcgtcgcacaaattctccaaaagtatttgtgcttttctctcttgttcaaggtttctcaaacaactagagaatgaagatttta |
10562007 |
T |
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| Q |
418 |
cttcagaaagctcacaagcaagcctctgttgcaagctttcagagtgctttcgtagccttctctcatcttctagctcttctttaagtgattgtacctcagt |
517 |
Q |
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| T |
10562008 |
cttcagaaagctcacaagcaagcctctgttgcaagctttcagagtgctttcgtagccttctctcatcttctagctcttctttaagtgattgtacctcagt |
10562107 |
T |
|
| Q |
518 |
ttgaattctatcatgttctttattcttcctaacaaatttttcaattgtcatttgcttcattaatttctccatttcctgtctgttcatttgtttctctcgt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10562108 |
ttgaattctatcatgttctttattcttcctaacaaatttttcaattgtcatttgcttcattaatttctccatttcctgtctgttcatttgtttctctcgt |
10562207 |
T |
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| Q |
618 |
attaactccttcatctgtg |
636 |
Q |
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||||||||||||||||||| |
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| T |
10562208 |
attaactccttcatctgtg |
10562226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 48234363 - 48234311
Alignment:
| Q |
102 |
cgttttgcatgaagaaatgtttctatatcaaaacctaacttgtcaacaattga |
154 |
Q |
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| T |
48234363 |
cgttttgcatgaagaaatgtttcaatatcaatgcgtaacttgtcaactattga |
48234311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 48231930 - 48231878
Alignment:
| Q |
306 |
tgttcataattttttattcctttggcaaactcgtcgcacaaattctccaaaag |
358 |
Q |
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|||||||||| | ||| |||||||||||| || || ||||||||||||||||| |
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| T |
48231930 |
tgttcataatctcttactcctttggcaaaatcatcacacaaattctccaaaag |
48231878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 48232155 - 48232091
Alignment:
| Q |
90 |
aagtcaatggaacgttttgcatgaagaaatgtttctatatcaaaacctaacttgtcaacaattga |
154 |
Q |
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| T |
48232155 |
aagtcaatagatctttttgtatgaagaaatgtttcaatatcaacatgtaacttgtcaactattga |
48232091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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