View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19716_high_5 (Length: 291)
Name: NF19716_high_5
Description: NF19716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19716_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 25896369 - 25896096
Alignment:
| Q |
8 |
gatggttacttttgctgtgaccctccagactatgtcaccaaacttctcattccaccttcgtccagatccaagagatcgaaatccaccactgacaatttca |
107 |
Q |
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| T |
25896369 |
gatggttacttttgctgtgaccctccagactatgtcaccaaacttctcattccaccttcctccagatccaagagatcgaaatccaccactgacaatttca |
25896270 |
T |
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| Q |
108 |
cctggagctggagttaccttaatgtacgtggaaataccgaattgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttcccc |
207 |
Q |
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| T |
25896269 |
cctggagctggagttaccttaatgtacgtggaaataccgaattgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttcccc |
25896170 |
T |
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| Q |
208 |
agttgaaagcgaatttgtcgatcctattctcaaacacctccgagatcacaaagagcatatgaatctactttcat |
281 |
Q |
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| T |
25896169 |
agttgaaagcgaatttgtcgaccctattctcaaacacctccgagatcacaaagagtatatgaatctactttcat |
25896096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 30078253 - 30078343
Alignment:
| Q |
150 |
tgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgatcctattctcaa |
240 |
Q |
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| T |
30078253 |
tgggcatcgttggcaactttcatagtatggtggaagcatttctcgatgtcttttcctcacgtgaaagtgaatttgtcgaccctattctcaa |
30078343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 17772516 - 17772607
Alignment:
| Q |
148 |
attgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgatcctattctca |
239 |
Q |
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| T |
17772516 |
attgggcatcattggcaacttgcagagtatggaggaagcatatcttgatgtcttttccctgcgtgaaagtgaatttgtcgaccctatgctca |
17772607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 45793300 - 45793348
Alignment:
| Q |
147 |
aattgggcatcattggccatttccacagtatgatggaagcatttcttga |
195 |
Q |
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| T |
45793300 |
aattgggcataattagcaactttcacagtatgatggaagcatttcttga |
45793348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 36162171 - 36162231
Alignment:
| Q |
180 |
tggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgatcctattctcaa |
240 |
Q |
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| T |
36162171 |
tggaagcattttttgatgtcttttccctgactgaaagtgaatttgtcgaccctattctcaa |
36162231 |
T |
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