View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19716_low_1 (Length: 1050)
Name: NF19716_low_1
Description: NF19716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19716_low_1 |
 | |
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| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 968; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 968; E-Value: 0
Query Start/End: Original strand, 16 - 1050
Target Start/End: Original strand, 36466687 - 36467721
Alignment:
| Q |
16 |
ataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctcatatagacttatatgctcctaaactttttaacttcagaaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36466687 |
ataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctcatatagacttatatgctcctaaactttttaacttcagaaaca |
36466786 |
T |
|
| Q |
116 |
aggatgatttttactacaagaaaacatatatcagttacaagacaatatatcagagtaaattagactcaattcagaattcactgctgcaaaaatgattttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36466787 |
aggatgatttttactacaagaaaacatatatcagttacaagacaatatatcagagtaaattagactcaattcagaattcactgctgcaaaaatgattttt |
36466886 |
T |
|
| Q |
216 |
ctcttgaagactcgatatatgtcatgtcaaagtaaattttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcannnnnnnna |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
36466887 |
ctcttgaagactcgatatatgtcatgtcaaagtaaattttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttttttta |
36466986 |
T |
|
| Q |
316 |
tatatgcgtgatcaaacaattataatagatagcaggtggattttttgttaaataaagtaggcctaactacaaatgtaccatggccaccatatccataaga |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36466987 |
tatatgcgtgatcaaacaattataatagatagcaggtggattttttgttaaataaagtaggcctaactacaaatgtaccatggcccccatatccataaga |
36467086 |
T |
|
| Q |
416 |
tacaatctaacatttgtatatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467087 |
tacaatctaacatttgtatatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactat |
36467186 |
T |
|
| Q |
516 |
aatgtaatagcccatttaccttagatattagttcaatcctgcactgcctgcctacatctttctcttcttatagtctaattggctctaagtcatcacccta |
615 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467187 |
aatgttatagcccatttaccttagatattagttcaatcctgcactgcctgcctacatctttctcttcttatagtctaattggctctaagtcatcacccta |
36467286 |
T |
|
| Q |
616 |
catgacttgaagcatttctcacaatgattgactaatcatcactataatgnnnnnnnnngtaggttataattttaaaatgtctacatatagtgaagcaaca |
715 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467287 |
catgacttgaagcatttctcacaatgattaactaatcatcactataatgtttttttttgtaggttataattttaaaatgtctacatatagtgaagcaaca |
36467386 |
T |
|
| Q |
716 |
tcgccttttgatgtatatagtgatacagataaggtggaatttaatagtgttaataatattgacactgataatgatacaaatggggtggaatttaattgtg |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467387 |
tcgccttttgatgtatatagtgatacagataaggtggaatttaatagtgttaataatattgacactgataatgatacaaatggggtggaatttaattgtg |
36467486 |
T |
|
| Q |
816 |
ttaatgatgttgacactgatagtgacattgatagtgatactgaagatataaaagttaatagcagcaacgatgttcgtactgatggagatgcagacggtgt |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36467487 |
ttaatgatgttgacactgatagtgacattgatagtgatactgaagatataaaagttaatagcagcaacgatgttcgtactgatggagatgcagacggtgt |
36467586 |
T |
|
| Q |
916 |
ggaattaaaccatggtaatggtgtttgcaatgagcaagggaaaaagaactttgatggttacaaatgcatcaatgatgtgacagatgatgatgtaaaggat |
1015 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
36467587 |
ggaattaaaccatggtaatggtgtttgcaatgagcaagggaaaaagaactttgatggttacaaatgcatcaatgatgtgacagatgatgatgtaagggat |
36467686 |
T |
|
| Q |
1016 |
atggaattcaacacagaggatgaagctacggagtt |
1050 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467687 |
atggaattcaacacagaggatgaagctacggagtt |
36467721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 21190056 - 21189758
Alignment:
| Q |
16 |
ataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctcatatagacttatatgctcctaaa-ctttttaacttcagaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21190056 |
ataaaaacaccagctactaaaccagaacaggaactgctatcagtacatgaaattgctcatatagacttatatgctcctaaaactttttaacttcagaaac |
21189957 |
T |
|
| Q |
115 |
aaggatgatttttactacaagaaaacatatatcagttacaag--------------acaatatatcagagtaaattagactcaattcagaattcactgct |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21189956 |
aaggataatttttactacaagaaaacatatatcagttacaagggtcaagagataagacaatatatcatagtaaattagactcaattcagaattcactgct |
21189857 |
T |
|
| Q |
201 |
gcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaattttgcgcatctagtcattaacatatatcagaaatgttattcttaata |
299 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21189856 |
gcaaaaatgatttttctcttgaagacttgatatatatcatgtcaaagtaaattttgcacatctagtcattaacatatctcagaaatgttattcttaata |
21189758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 846 - 1005
Target Start/End: Original strand, 28738738 - 28738898
Alignment:
| Q |
846 |
atagtgatactgaagatataaaagttaatagcagcaacgatgttcgtactgatggagatgcagacggtgtggaattaaaccatggtaatggtgtttgcaa |
945 |
Q |
| |
|
|||||||||||||||||||| |||| |||| | || | ||||||||| |||| |||||| || | || ||||||| |||||||||||||||||||||| |
|
|
| T |
28738738 |
atagtgatactgaagatatagaagtcaataacgacatcaatgttcgtagtgatagagatgtaggcagtatggaattcaaccatggtaatggtgtttgcag |
28738837 |
T |
|
| Q |
946 |
tgagcaagggaaaa-agaactttgatggttacaaatgcatcaatgatgtgacagatgatga |
1005 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||| | | |||||||| ||||||| |
|
|
| T |
28738838 |
tgagcaagggaaaagagaattccaatggttacaaatgcattagtaatgtgacaaatgatga |
28738898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 867 - 1005
Target Start/End: Original strand, 28718448 - 28718587
Alignment:
| Q |
867 |
aagttaatagcagcaacgatgttcgtactgatggagatgcagacggtgtggaattaaaccatggtaatggtgtttgcaatgagcaagggaaaa-agaact |
965 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||| || | || |||| |||||||||||||||||||||| ||||||| ||||| |||| | |
|
|
| T |
28718448 |
aagttaatagcggcaacgatgttcgtactgatagagatacaggcgatatgaaattcaaccatggtaatggtgtttgcagtgagcaattgaaaagagaatt |
28718547 |
T |
|
| Q |
966 |
ttgatggttacaaatgcatcaatgatgtgacagatgatga |
1005 |
Q |
| |
|
| |||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
28718548 |
ctaatggctacaaatgcatcagtgatgtgaccaatgatga |
28718587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 674 - 769
Target Start/End: Original strand, 28718324 - 28718419
Alignment:
| Q |
674 |
gtaggttataattttaaaatgtctacatatagtgaagcaacatcgccttttgatgtatatagtgatacagataaggtggaatttaatagtgttaat |
769 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| |||||| |||||||||||||||||| |||| | |||| ||||||||| |||||| |
|
|
| T |
28718324 |
gtaggttataattttaaaatgtctacatacaatgaagcaatgtcgcctcttgatgtatatagtgatatagatgaagtggtatttaatagcgttaat |
28718419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 740
Target Start/End: Original strand, 28738653 - 28738716
Alignment:
| Q |
678 |
gttataattttaaaatgtcta-catatagtgaagcaacatcgccttttgatgtatatagtgata |
740 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||||||| |||||| |||||||||||||||||| |
|
|
| T |
28738653 |
gttataatttaaaaatgtctggcatacagtgaagcaatgtcgcctcttgatgtatatagtgata |
28738716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 6e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 324 - 581
Target Start/End: Original strand, 41467083 - 41467338
Alignment:
| Q |
324 |
tgatcaaacaattataatagatagcaggtggattttttgttaaataaagtaggcctaactacaaatgtaccatggccaccatatccataagatacaatct |
423 |
Q |
| |
|
||||||||||| ||||||||||||| ||| | ||| ||||||||||||||||||| |||||||||| ||||||| |||| ||||||| ||||||||| |
|
|
| T |
41467083 |
tgatcaaacaaacataatagatagcaagtgaacatttagttaaataaagtaggcctagatacaaatgtaacatggcc-ccatgtccataatatacaatct |
41467181 |
T |
|
| Q |
424 |
aacatttgtatatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgtaat |
523 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| | || |
|
|
| T |
41467182 |
aacatttgaatatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtc-atggctaacaaggatactataattttat |
41467280 |
T |
|
| Q |
524 |
agcccatttaccttagatattagttcaatcctgcactgcctgcctacatctttctctt |
581 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
41467281 |
agcctatttaccttagataatagttcaatcctgcactgtctacctacatctttttctt |
41467338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 40568293 - 40568067
Alignment:
| Q |
98 |
tttttaacttcagaaacaaggatgatttttactacaagaaaacatatatcagttacaag--------------acaatatatcagagtaaattaga--ct |
181 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| | | || |
|
|
| T |
40568293 |
tttttaagttaagaaacaagaatgatttttactacaagaaaaaatatatccgttacaaggttcaagcgataagacaatatatcagagtaaatcaaattct |
40568194 |
T |
|
| Q |
182 |
caattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaattttgcgcatct--agtcattaacatatat |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
40568193 |
caattcagaattcactgctgcaaaaatgatttttctcccgaagactcaatatatatcatgtcaaagtaaattttgcacatctagagtcattaatatatat |
40568094 |
T |
|
| Q |
280 |
cagaaatgttattcttaataacatgca |
306 |
Q |
| |
|
||||||||| | || || ||||||||| |
|
|
| T |
40568093 |
cagaaatgtgaatcctactaacatgca |
40568067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 415 - 520
Target Start/End: Complemental strand, 41703942 - 41703837
Alignment:
| Q |
415 |
atacaatctaacatttgtat-atactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatact |
513 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||| | || | |||||||||||| || |
|
|
| T |
41703942 |
atacaagctaacatctgtattatactttcaaaactaagaactaacatgagttaattgttcattaaaacctaaaaaaacgtct-tagctaacaaggatcct |
41703844 |
T |
|
| Q |
514 |
ataatgt |
520 |
Q |
| |
|
||||||| |
|
|
| T |
41703843 |
ataatgt |
41703837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 154 - 306
Target Start/End: Complemental strand, 30747452 - 30747300
Alignment:
| Q |
154 |
aagacaatatatcagagtaaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaatt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30747452 |
aagacaatatatcagagtaaattagactcaattcagaatttactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgttaaagtaaatt |
30747353 |
T |
|
| Q |
254 |
ttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgca |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30747352 |
ttgcgcatctagttattaacatatatcagaaatgttattcttgataacatgca |
30747300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 154 - 306
Target Start/End: Complemental strand, 30768903 - 30768751
Alignment:
| Q |
154 |
aagacaatatatcagagtaaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaatt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30768903 |
aagacaatatatcagagtaaattagactcaattcagaatttactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgttaaagtaaatt |
30768804 |
T |
|
| Q |
254 |
ttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgca |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30768803 |
ttgcgcatctagttattaacatatatcagaaatgttattcttgataacatgca |
30768751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 20625920 - 20625781
Alignment:
| Q |
18 |
aaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctcatatagacttatatgctcct-aaactttttaacttcagaaacaa |
116 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||| |||||||| |||| ||||| ||| |||||||||||| |||||||||| || |||||||| |
|
|
| T |
20625920 |
aaaaacaccaactattaaaccaaaacaggaactgccatcagtacatgacattggtcataaagatttatatgctcctaaaactttttaggttaagaaacaa |
20625821 |
T |
|
| Q |
117 |
ggatgatttttactacaagaaaacatatatcagttacaag |
156 |
Q |
| |
|
||||||||||||||| ||||||| ||||| || ||||||| |
|
|
| T |
20625820 |
ggatgatttttactaaaagaaaaaatataccatttacaag |
20625781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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