View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19716_low_5 (Length: 350)
Name: NF19716_low_5
Description: NF19716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19716_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 7090031 - 7089827
Alignment:
| Q |
20 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
119 |
Q |
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| T |
7090031 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgtgcacttgtag |
7089932 |
T |
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| Q |
120 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
219 |
Q |
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| T |
7089931 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
7089832 |
T |
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| Q |
220 |
ggtaa |
224 |
Q |
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||||| |
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| T |
7089831 |
ggtaa |
7089827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 7669857 - 7669653
Alignment:
| Q |
20 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
119 |
Q |
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| T |
7669857 |
cagagtcaatgggctaacttacctcctgagttactattagacataattcaaagggtggaagctagtgaaaccacttggccatctctccgcgcacttgtag |
7669758 |
T |
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| Q |
120 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
219 |
Q |
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| T |
7669757 |
cttgtgcctcagtttgtagattgtggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcattgaagca |
7669658 |
T |
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| Q |
220 |
ggtaa |
224 |
Q |
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||||| |
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| T |
7669657 |
ggtaa |
7669653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 7089776 - 7089719
Alignment:
| Q |
281 |
aagcttggaagcacatggtgtaaggtactaaatgtgtaattactttgtcctttatttt |
338 |
Q |
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| T |
7089776 |
aagcttggaagcacatggtgtaaggtactaaatgtgtaattactttgtcctttatttt |
7089719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 7669606 - 7669549
Alignment:
| Q |
281 |
aagcttggaagcacatggtgtaaggtactaaatgtgtaattactttgtcctttatttt |
338 |
Q |
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| T |
7669606 |
aagcttggaagcacatggtgtatggtactaaatgtgttattactttgtcttttatttt |
7669549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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