View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19716_low_6 (Length: 317)
Name: NF19716_low_6
Description: NF19716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19716_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 6100995 - 6101157
Alignment:
| Q |
22 |
atagctattgagaggcataatcggtagcatatgatctgatacag--tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgcca |
119 |
Q |
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||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
6100995 |
atagctattgagaggcataatcggtagcatatgatttggtacaaaatccatttgttgacacacgtgtttcaaacgagttgtcagaatgagtttaatgcca |
6101094 |
T |
|
| Q |
120 |
ttcacttttggctgaattccagccttttgaaaatcgatgtacctccaaacatcatccaaaata |
182 |
Q |
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||| | |||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
6101095 |
ttcgttcttggctgaattccagctttctgaaaatcgatgtacctccaaacatcatccaaaata |
6101157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 6234715 - 6234831
Alignment:
| Q |
66 |
tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc |
165 |
Q |
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||||| || ||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||| |||||||| |||| || ||||| || || ||| |
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| T |
6234715 |
tccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcacttttggatgaattcccaccttctgcaaatcaatatatttcc |
6234814 |
T |
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| Q |
166 |
aaacatcatccaaaata |
182 |
Q |
| |
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||||||||||||||||| |
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| T |
6234815 |
aaacatcatccaaaata |
6234831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 6089152 - 6089274
Alignment:
| Q |
60 |
atacagtccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgt |
159 |
Q |
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||||| ||||| |||||||||||| |||||||||||||||||| ||| | |||||| |||||||| |||| |||||||| |||||| ||||| |||| |
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| T |
6089152 |
atacaatccatctgttgacacacaagtttcaaacgagttgtcagaattactttaataccattcacctttgtatgaattcccaccttttccaaatcaatgt |
6089251 |
T |
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| Q |
160 |
acctccaaacatcatccaaaata |
182 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
6089252 |
atttccaaacatcatccaaaata |
6089274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 6208297 - 6208413
Alignment:
| Q |
66 |
tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc |
165 |
Q |
| |
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||||| || ||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| | |||||||| |||| || ||||| || || ||| |
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| T |
6208297 |
tccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcactttttgatgaattcccaccttctgcaaatcaatataattcc |
6208396 |
T |
|
| Q |
166 |
aaacatcatccaaaata |
182 |
Q |
| |
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||||||||||||||||| |
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| T |
6208397 |
aaacatcatccaaaata |
6208413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 6237596 - 6237712
Alignment:
| Q |
66 |
tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc |
165 |
Q |
| |
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||||| || ||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| | |||||||| |||| || ||||| || || ||| |
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| T |
6237596 |
tccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcactttttgatgaattcccaccttctgcaaatcaatataattcc |
6237695 |
T |
|
| Q |
166 |
aaacatcatccaaaata |
182 |
Q |
| |
|
||||||||||||||||| |
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| T |
6237696 |
aaacatcatccaaaata |
6237712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 6106344 - 6106445
Alignment:
| Q |
81 |
acatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctccaaacatcatccaaaa |
180 |
Q |
| |
|
|||||||||||||| ||||| | ||| | ||||||||||||||||||||| |||||||| |||| || ||||| || || |||||||||||||||||| |
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| T |
6106344 |
acatgtttcaaacgtgttgttagaatcactttaatgccattcacttttggatgaattcctaccttctgcaaatcaatatatttccaaacatcatccaaaa |
6106443 |
T |
|
| Q |
181 |
ta |
182 |
Q |
| |
|
|| |
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|
| T |
6106444 |
ta |
6106445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 6180714 - 6180830
Alignment:
| Q |
66 |
tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc |
165 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||| | ||| | |||||||||||| |||||||| |||||||| |||| | ||||| || || ||| |
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| T |
6180714 |
tccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattcccaccttcttcaaatcaatatatttcc |
6180813 |
T |
|
| Q |
166 |
aaacatcatccaaaata |
182 |
Q |
| |
|
||||||||||||||||| |
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| T |
6180814 |
aaacatcatccaaaata |
6180830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 6247535 - 6247651
Alignment:
| Q |
66 |
tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc |
165 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||| | ||| | |||||||||||| |||||||| |||||||| |||| | ||||| || || ||| |
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| T |
6247535 |
tccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattcccaccttcttcaaatcaatatatttcc |
6247634 |
T |
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| Q |
166 |
aaacatcatccaaaata |
182 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
6247635 |
aaacatcatccaaaata |
6247651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 6213163 - 6213264
Alignment:
| Q |
81 |
acatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctccaaacatcatccaaaa |
180 |
Q |
| |
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||||||| |||||||||||||||||| | |||||||||||| |||| ||| |||||||| ||| || ||||| || || |||||||||||||||||| |
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| T |
6213163 |
acatgttccaaacgagttgtcaaaatcactttaatgccatttacttctggatgaattcccaacttctgcaaatcaatatatttccaaacatcatccaaaa |
6213262 |
T |
|
| Q |
181 |
ta |
182 |
Q |
| |
|
|| |
|
|
| T |
6213263 |
ta |
6213264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 6094506 - 6094631
Alignment:
| Q |
49 |
catatgatctg--atacagtccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttt |
146 |
Q |
| |
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||||||||||| ||||| ||||| | |||||||||||||||||||||||||| | ||| | |||||| ||||||| ||| | ||||||| ||||| |
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| T |
6094506 |
catatgatctggcatacaatccatctcgtgacacacatgtttcaaacgagttgttagaatcactttaattacattcacatttagaggaattcccaccttt |
6094605 |
T |
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| Q |
147 |
tgaaaatcgatgtacctccaaacatc |
172 |
Q |
| |
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|| ||||| ||||| |||||||||| |
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| T |
6094606 |
tgcaaatcaatgtatttccaaacatc |
6094631 |
T |
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