View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19717_high_12 (Length: 364)

Name: NF19717_high_12
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19717_high_12
NF19717_high_12
[»] chr7 (1 HSPs)
chr7 (4-364)||(3682618-3682974)
[»] chr2 (1 HSPs)
chr2 (15-338)||(2089303-2089621)
[»] chr3 (3 HSPs)
chr3 (11-356)||(643872-644213)
chr3 (4-314)||(42830820-42831126)
chr3 (11-48)||(31874471-31874508)
[»] chr1 (3 HSPs)
chr1 (57-337)||(4534711-4534991)
chr1 (280-329)||(1947218-1947267)
chr1 (11-40)||(4535031-4535060)
[»] scaffold0031 (2 HSPs)
scaffold0031 (4-195)||(51366-51553)
scaffold0031 (265-364)||(51579-51678)
[»] chr4 (2 HSPs)
chr4 (151-195)||(25057020-25057064)
chr4 (127-191)||(30566881-30566945)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 4 - 364
Target Start/End: Original strand, 3682618 - 3682974
Alignment:
Q  4 ataaaatccaaactgtagcaaaccaaattgtcgtaaagaataaataaataggaagatcttggccatcccgccatcttagtaaattgcatgaattgatggc 103  Q
    |||||||||||||| ||||||||||||||||| |||||||||    |||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  3682618 ataaaatccaaactatagcaaaccaaattgtcctaaagaata----aataggaagatcttggccatcctgtcatcttagtaaattgcatgaattgatggc 3682713  T
Q  104 gcaaatgaaatggcataacgaacgaaatacctaaccagttaaggacattataccaaagctctctggatgcgtcacattgaataaataaatgttgtgctga 203  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||    
T  3682714 gcaaatgaaattgcataacgaacgaaatacctaaccaattaaggacattataccaaagctctctggatgcgtcacattgaagaaataaatgttgcactga 3682813  T
Q  204 ttcagtaactcaacacccagctgtcgcacacatgatatcatctgaatttagaatcctcctcctcaacaaatcatctttcgtcggcagtctgttgcgtaaa 303  Q
    |||||||| || |||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||    
T  3682814 ttcagtaattccacattcagctgtcgcacacatgttatcatctgaatttagaatcctcctcctcaacaaattatctttcgtcggcaatctattgcgtaaa 3682913  T
Q  304 agacgccaagccaacatagacacttttaaaggaatatgttgatgtcatacatcatccacga 364  Q
    |||||||||||||| | |||||||||||||||||| |||||||  |||||||| |||||||    
T  3682914 agacgccaagccaatagagacacttttaaaggaatctgttgataccatacatcgtccacga 3682974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 2089303 - 2089621
Alignment:
Q  15 actgtagcaaaccaaattgtcgtaaagaataaataaataggaagatcttggccatcccgccatcttagtaaattgcatgaattgatggcgcaaatgaaat 114  Q
    ||||||||||||||||||| |||||||||||||| |    |||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  2089303 actgtagcaaaccaaattgccgtaaagaataaatga----gaagatcttg-ccatcccgccatcttagtaaattacataaattgatgtcgcaaatgaaat 2089397  T
Q  115 ggcataacgaacgaaatacctaaccagttaaggacattataccaaagctctctggatgcgtcacattgaataaataaatgttgtgctgattcagtaactc 214  Q
    ||||| || || |||||||||||||| || |  |||||||||||||||||||| |||| ||||||||||| |||||||||| | ||||||||  ||        
T  2089398 ggcattaccaaagaaatacctaaccaattgaaaacattataccaaagctctctagatgtgtcacattgaagaaataaatgtggagctgattccatattat 2089497  T
Q  215 aacacccagctgtcgcacacatgatatcatctgaatttagaatcctcctcctcaacaaatcatctttcgtcggcagtctgttgcgtaaaagacgccaagc 314  Q
     ||||||||||| ||||| ||  ||||||| |||||| ||||| | |||||||  |||||  ||||||||||| ||||| ||||| || |||||||||||    
T  2089498 gacacccagctgccgcacgcaacatatcatatgaattaagaatacccctcctcgccaaattgtctttcgtcggaagtctattgcgaaagagacgccaagc 2089597  T
Q  315 caacatagacacttttaaaggaat 338  Q
    || || ||||||||||||||||||    
T  2089598 catcagagacacttttaaaggaat 2089621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 643872 - 644213
Alignment:
Q  11 ccaaactgtagcaaaccaaattgtcgtaaagaataaataaataggaagatcttggccatcccgccatcttagtaaattgcatgaattgatggcgcaaatg 110  Q
    |||||||||||||||||||||||||||||||||||||| | |||    ||||||||||||||||||| |||||||||||||| || ||||| ||||| ||    
T  643872 ccaaactgtagcaaaccaaattgtcgtaaagaataaatgagtag----atcttggccatcccgccattttagtaaattgcataaagtgatgtcgcaactg 643967  T
Q  111 aaatggcataacgaacgaaatacctaaccagttaaggacattataccaaagctctctggatgcgtcacattgaataaataaatgttgtgctgattcagta 210  Q
    ||| ||||| || ||  |||| |||| ||||||||| |||||||||||||||||||| |||| ||||||||||| ||||||||| || || ||||| |||    
T  643968 aaaaggcattaccaaaaaaattcctagccagttaagaacattataccaaagctctctagatgtgtcacattgaagaaataaatggtgagccgattccgta 644067  T
Q  211 actcaacacccagctgtcgcacacatgatatcatctgaatttagaatcctcctcctcaacaaatcatctttcgtcggcagtctgttgcgtaaaagacgcc 310  Q
         ||||||||||||||| ||||  ||||| || ||||| ||||| |||||||||  |||||  |||||| |||| ||||||||| |||| |||||||    
T  644068 gtagcacacccagctgtcgcgcacaaaatatcgtcggaattaagaatactcctcctcgccaaattgtctttcatcggaagtctgttgtgtaagagacgcc 644167  T
Q  311 aagccaacatagacacttttaaaggaatatgttgatgtcatacatc 356  Q
    |||||| || |||| ||||||| ||||| |||| ||| || |||||    
T  644168 aagccatcagagacgcttttaatggaatttgtttatgccagacatc 644213  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 314
Target Start/End: Complemental strand, 42831126 - 42830820
Alignment:
Q  4 ataaaatccaaactgtagcaaaccaaattgtcgtaaagaataaataaataggaagatcttggccatcccgccatcttagtaaattgcatgaattgatggc 103  Q
    |||||| ||||| ||| ||||||||||| |||||||| || |||| |    |||||||||| |||||||||||||||||||||||||| ||| ||||| |    
T  42831126 ataaaacccaaattgtggcaaaccaaatagtcgtaaaaaacaaatga----gaagatcttgaccatcccgccatcttagtaaattgcaagaaatgatgtc 42831031  T
Q  104 gcaaatgaaatggcataacgaacgaaatacctaaccagttaaggacattataccaaagctctctggatgcgtcacattgaataaataaatgttgtgctga 203  Q
    |||| || |||||||| || || || ||||||| |||  |||  ||||||| ||| |||||  | |||| | ||| ||||| ||||||||||   ||| |    
T  42831030 gcaactgtaatggcatcaccaaagagatacctagccaagtaaaaacattattccatagctcggtagatgtgacacgttgaagaaataaatgtgaagctta 42830931  T
Q  204 ttcagtaactcaacacccagctgtcgcacacatgatatcatctgaatttagaatcctcctcctcaacaaatcatctttcgtcggcagtctgttgcgtaaa 303  Q
    ||| ||     |||||||| |  |||||||||   ||| ||||||||| ||||| | ||| |||  ||||| |||||||||||  ||||| || | ||||    
T  42830930 ttccgttttgtaacacccaacattcgcacacaaagtattatctgaattaagaataccccttctcgccaaattatctttcgtcgatagtctattacataaa 42830831  T
Q  304 agacgccaagc 314  Q
    |||||||||||    
T  42830830 agacgccaagc 42830820  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 31874471 - 31874508
Alignment:
Q  11 ccaaactgtagcaaaccaaattgtcgtaaagaataaat 48  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  31874471 ccaaactgttgcaaaccaaattgtcctaaagaataaat 31874508  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 57 - 337
Target Start/End: Complemental strand, 4534991 - 4534711
Alignment:
Q  57 agatcttggccatcccgccatcttagtaaattgcatgaattgatggcgcaaatgaaatggcataacgaacgaaatacctaaccagttaaggacattatac 156  Q
    |||||||||||||||| |||  || ||||| ||||| || ||||| ||||| ||||| ||||| || || ||||| |||| ||||||||| |||||||||    
T  4534991 agatcttggccatcccaccaattttgtaaaatgcataaagtgatgtcgcaagtgaaaaggcattaccaaagaaattcctagccagttaagaacattatac 4534892  T
Q  157 caaagctctctggatgcgtcacattgaataaataaatgttgtgctgattcagtaactcaacacccagctgtcgcacacatgatatcatctgaatttagaa 256  Q
    ||||||||||| ||||  || ||||||| |||||| || || |||  ||| ||      |||||||||||  || ||||  ||||||||||| || || |    
T  4534891 caaagctctctagatgtatcgcattgaagaaataagtgatgagctccttccgtggtagcacacccagctgatgctcacaaaatatcatctgagttaagga 4534792  T
Q  257 tcctcctcctcaacaaatcatctttcgtcggcagtctgttgcgtaaaagacgccaagccaacatagacacttttaaaggaa 337  Q
    | | |||||||  |||||  ||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||    
T  4534791 tacccctcctcgtcaaattgtctttcgtcggaagtctattgcgtaaaagacgccaagccatcagagacacttttaaaggaa 4534711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 1947267 - 1947218
Alignment:
Q  280 ttcgtcggcagtctgttgcgtaaaagacgccaagccaacatagacacttt 329  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  1947267 ttcgtcggtagtctgttgcgaaaaagacgccaagccaacaaagacacttt 1947218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 40
Target Start/End: Complemental strand, 4535060 - 4535031
Alignment:
Q  11 ccaaactgtagcaaaccaaattgtcgtaaa 40  Q
    ||||||||||||||||||||||||||||||    
T  4535060 ccaaactgtagcaaaccaaattgtcgtaaa 4535031  T

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Target: scaffold0031 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 51366 - 51553
Alignment:
Q  4 ataaaatccaaactgtagcaaaccaaattgtcgtaaagaataaataaataggaagatcttggccatcccgccatcttagtaaattgcatgaattgatggc 103  Q
    |||||||||||||||| |||||||||||| |||| ||    ||||||||||||||||||   ||| |||||||||||||||||||||||||| ||||| |    
T  51366 ataaaatccaaactgttgcaaaccaaattttcgtgaa----aaataaataggaagatctgaaccaacccgccatcttagtaaattgcatgaagtgatgtc 51461  T
Q  104 gcaaatgaaatggcataacgaacgaaatacctaaccagttaaggacattataccaaagctctctggatgcgtcacattgaataaataaatgt 195  Q
    |||||    ||||||||||||| || ||||||| ||| ||||  ||||||| |||||||||||| |||  |||| |||| | ||||||||||    
T  51462 gcaaaaatgatggcataacgaaagagatacctagccaattaaaaacattattccaaagctctctagatatgtcatattgcaaaaataaatgt 51553  T

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Target: scaffold0031; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 364
Target Start/End: Original strand, 51579 - 51678
Alignment:
Q  265 ctcaacaaatcatctttcgtcggcagtctgttgcgtaaaagacgccaagccaacatagacacttttaaaggaatatgttgatgtcatacatcatccacga 364  Q
    ||||||||||  ||||||||| | ||| |||| ||||||||||||||| |||||| |||||||||| | ||||| ||   ||| || |||||||||||||    
T  51579 ctcaacaaattgtctttcgtccgaagtttgttacgtaaaagacgccaaaccaacagagacacttttgagggaatctgcctatgccagacatcatccacga 51678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 25057020 - 25057064
Alignment:
Q  151 ttataccaaagctctctggatgcgtcacattgaataaataaatgt 195  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||    
T  25057020 ttataccaaagctctctggatgtgtcacaatgaagaaataaatgt 25057064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 30566881 - 30566945
Alignment:
Q  127 gaaatacctaaccagttaaggacattataccaaagctctctggatgcgtcacattgaataaataa 191  Q
    ||||||||||| |||||   ||| ||| |||||||||||||||||| ||||||||||| ||||||    
T  30566881 gaaatacctaagcagttccagactttagaccaaagctctctggatgtgtcacattgaagaaataa 30566945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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