View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19717_high_19 (Length: 295)
Name: NF19717_high_19
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 27320519 - 27320256
Alignment:
| Q |
19 |
tagagtgatgcaacaaccaaacatcaacacaatcacgatgaaacacatggctacaattaggaatcaaacgcagcgtttcatcatccgcaaactcatttaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27320519 |
tagagtgatgcaacaaccaaacatcaacacaatcacgatgaaatacatggctacaattaggaatcaaacgcagcgtttcatcatccgcaaactcatttaa |
27320420 |
T |
|
| Q |
119 |
acacactgcacattctaacgtgactcttccaatcttgagatccttcacctcagaatatacaaatttcggaaaattttcaatgatcgttggatcaagaccg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27320419 |
acacactgcacattctaacgtgactcttccaatcttgagatccttcacctcagaatatacaaatttcggaaaattttcaatgatcgttggatcaagaccg |
27320320 |
T |
|
| Q |
219 |
cgtggttgccggcaaacatcaccaccggtaacttgagcagttagatcgacccttcctcgtattc |
282 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27320319 |
cgtgattgccggcaaacatcaccaccggtaaccggagcagttagatcgacccttcctcgtattc |
27320256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 45687580 - 45687501
Alignment:
| Q |
56 |
atgaaacacatggctacaattaggaatcaaacgcagcgtttcatcatccgcaaactcatttaaacacactgcacattcta |
135 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||| || ||||||| |
|
|
| T |
45687580 |
atgaaacacgtggctacaattcggaatcaaacgcagcgtttcatcgtcttgaaactcgtttaagcacacggcgcattcta |
45687501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University