View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_high_20 (Length: 287)
Name: NF19717_high_20
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 275
Target Start/End: Original strand, 13083959 - 13084228
Alignment:
| Q |
6 |
ggagtagcatagggaggaaggccatggtcaatgtgaagagtgaacatggttctatatgtcacatcatttgtttcatttgccaatttaaacctaaagaatc |
105 |
Q |
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| T |
13083959 |
ggagttgcatagagaggaaggccatggtcaatgtgaagagtgaacatggttctatatgtcacatcatttgtttcattttccaatttaaacctaaagaatc |
13084058 |
T |
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| Q |
106 |
gtagaagtgccattgacactattttcatctgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgcaaatatgaaaaatagttatattt |
205 |
Q |
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| T |
13084059 |
gaacaagtgccattgacactattttcatttgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgcaaatatgaaaaatacttatattt |
13084158 |
T |
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| Q |
206 |
cactcaaaagaaaggtaagaaattaaatattcaaaatggtccttgaaattgtaggaccatattatacttc |
275 |
Q |
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| T |
13084159 |
cactcaaaagaaaggtaagaaattaaatattcaaaatggtccttcaaattgtaggaccatataatacttc |
13084228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 13076955 - 13077158
Alignment:
| Q |
6 |
ggagtagcatagggaggaaggccatggtcaatgtgaagagtgaacatggttctatatgtcacatcatttgtttcatttgccaatttaaacctaaagaatc |
105 |
Q |
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| T |
13076955 |
ggagttgcatagagaggaaggccatggtcaatgtgaagagtgaacatggttctatatgtcacatcatttgtttcattttccaatttaaacctaaagaatc |
13077054 |
T |
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| Q |
106 |
gtagaagtgccattgacactattttcatctgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgcaaatatgaaaaatagttatattt |
205 |
Q |
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| T |
13077055 |
gaacaagtgccattgacactattttcatttgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgcaaatatgaaaaatacttatattt |
13077154 |
T |
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| Q |
206 |
cact |
209 |
Q |
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|||| |
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| T |
13077155 |
cact |
13077158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 13102529 - 13102589
Alignment:
| Q |
123 |
actattttcatctgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgca |
183 |
Q |
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| T |
13102529 |
actattttcatttgtctgtatgcaaagtccttccctaagcacatacgtggtccagcctgca |
13102589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 13024205 - 13024151
Alignment:
| Q |
129 |
ttcatctgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgca |
183 |
Q |
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| T |
13024205 |
ttcatctgtctataagcaaactcctttcctaggcatatccgaggacctgcctgca |
13024151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 13113370 - 13113430
Alignment:
| Q |
123 |
actattttcatctgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgca |
183 |
Q |
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| T |
13113370 |
actattttcatttgtctgtatgcaaagtccttccctaagcacattcgtggtccagcctgca |
13113430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 18671254 - 18671194
Alignment:
| Q |
123 |
actattttcatctgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgca |
183 |
Q |
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| T |
18671254 |
actattttcatttgtctgtatgcaaagtccttccctaagcacattcgtggtccagcctgca |
18671194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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