View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_high_28 (Length: 249)
Name: NF19717_high_28
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 44869554 - 44869719
Alignment:
| Q |
18 |
agattttctgcaaatcttctatgtggtttgagagtatgaacagagaatcacagaagagagttggaattgtaaaaaagatattgtgaagagagatatacat |
117 |
Q |
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| T |
44869554 |
agattttctgcaaatcttctatgtggtttgag--tatgaacagagaatcacagaagagagttggaattgtaaaaaagatattgtgaagagagatatacat |
44869651 |
T |
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| Q |
118 |
aatttttgcagttgcgtgtggagatacttttgtttaataaaaaacttattttgcttgtccaaagaaaaa |
186 |
Q |
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| T |
44869652 |
aatttttgcagttgcgtgtggagatacttttgtttaat-aaaaacttattttgcttgtccaaagaaaaa |
44869719 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 52970358 - 52970410
Alignment:
| Q |
187 |
gagaaatgcttaatagcacgacatacattgtcgtgtaagccacacaacctttg |
239 |
Q |
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| T |
52970358 |
gagaaatgcttaatagcacgacatacattgtcgtgtaagccgcacgacctttg |
52970410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 13284489 - 13284541
Alignment:
| Q |
186 |
agagaaatgcttaatagcacgacatacattgtcgtgtaagccacacaaccttt |
238 |
Q |
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| T |
13284489 |
agagaaatgtttaatagcacgacatacattgtcgtgtaagccgcactaccttt |
13284541 |
T |
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