View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_high_32 (Length: 237)
Name: NF19717_high_32
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38260999 - 38261227
Alignment:
| Q |
1 |
tacccatgttcaaaatgcaacaaaatattcgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgtagaagacagaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
38260999 |
tacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactgcaagttcgaaagtgaagaagacagaa |
38261098 |
T |
|
| Q |
101 |
aaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38261099 |
aaaagagatacatttctaggattcgaaagaggccgcgtcttcagattcaaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtga |
38261198 |
T |
|
| Q |
201 |
taagtcaaatgcttctgtcagtgatgatg |
229 |
Q |
| |
|
||||||| |||||| ||||| |||||||| |
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|
| T |
38261199 |
taagtcacatgcttatgtcaatgatgatg |
38261227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38244699 - 38244913
Alignment:
| Q |
1 |
tacccatgttcaaaatgcaacaaaatattcgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgtagaagacagaa |
100 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38244699 |
tacccatgttcccaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaa |
38244798 |
T |
|
| Q |
101 |
aaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtga |
200 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| |
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| T |
38244799 |
aaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatggaagaactacttttgttcctgttgttgcttgtgctga |
38244898 |
T |
|
| Q |
201 |
taagtcaaatgcttc |
215 |
Q |
| |
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||||||| ||||||| |
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| T |
38244899 |
taagtcacatgcttc |
38244913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 47285682 - 47285499
Alignment:
| Q |
7 |
tgttcaaaatgcaacaaaatattcgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgtagaagacagaaaaaaga |
106 |
Q |
| |
|
|||||| | ||||||||| || | | ||||||||| ||||| ||| |||||| |||||||||||||||| ||||||| |||||| |||||||||| |
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|
| T |
47285682 |
tgttcagagtgcaacaaagtaatagcaacatcacagaaattcgctgctcatgt---atcaagtcactacaagactgaaagtgaagaagagagaaaaaaga |
47285586 |
T |
|
| Q |
107 |
gatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttcctgttattgctt |
193 |
Q |
| |
|
||||||| |||||||| |||||||| || ||| || |||||||||||| ||||||||||||||||| ||||| |||| ||||||| |
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|
| T |
47285585 |
gatacatgtctaggatccgaaagagaccatatctccagattcaaaagctcgatgatggaacaactactcttgtttctgtcattgctt |
47285499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 47307213 - 47307067
Alignment:
| Q |
33 |
aacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgtagaagacagaaaaaagagatacatttctaggattcgaaagagg |
132 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||||||||| ||||||| |||||| | ||||||||||||||| |||||||| |||||||| |
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| T |
47307213 |
aacatcacaaaaatttgctagtcatg---catcaatacactacaagtcagaaagtgaagaagagaaaaaaaagagatacatgtctaggatccgaaagaga |
47307117 |
T |
|
| Q |
133 |
ccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttcc |
182 |
Q |
| |
|
|| ||| | | ||||||||||||||||||||||||||||||||||| |
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|
| T |
47307116 |
ccagatctccgattccaaaagctcaatgatggaacaactacttttgttcc |
47307067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 2589674 - 2589546
Alignment:
| Q |
65 |
caagtcactacaagttcgaaagtgtagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatgg |
164 |
Q |
| |
|
||||||||||||||| |||| | ||||||| ||||||||||||||||| |||| ||| |||||||| || ||| | |||||||||||||||||||| |
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|
| T |
2589674 |
caagtcactacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatgg |
2589575 |
T |
|
| Q |
165 |
aacaactacttttgttcctgttattgctt |
193 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |
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| T |
2589574 |
aacaactacttttgttccagttgttgctt |
2589546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 10299735 - 10299617
Alignment:
| Q |
65 |
caagtcactacaagttcgaaagtgtagaagacagaaaaaa-gagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatg |
163 |
Q |
| |
|
||||||||||||||| |||| | ||||||| |||||||| ||||||||| |||| ||| |||||| || ||| || |||||||||||||||||| |
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|
| T |
10299735 |
caagtcactacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgata |
10299636 |
T |
|
| Q |
164 |
gaacaactacttttgttcc |
182 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
10299635 |
gaacaactacttttgttcc |
10299617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 2589833 - 2589914
Alignment:
| Q |
100 |
aaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttc |
181 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| || ||||||||||||||| ||||||| ||||||||| |||||||||| |
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|
| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttc |
2589914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 22222503 - 22222647
Alignment:
| Q |
33 |
aacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgtagaagacagaaaaaagagatacatttctaggattcgaaagagg |
132 |
Q |
| |
|
|||||| ||||||||||||| |||||| ||||||||||||| || |||| | |||||| ||||||||||||||||| |||||||| | |||||| |
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|
| T |
22222503 |
aacatcccaaaaatttgctagtcatgt---ggcaagtcactacaattttgaaactcaagaagaaagaaaaaagagatacatgtctaggatcccaaagaga |
22222599 |
T |
|
| Q |
133 |
ccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgtt |
180 |
Q |
| |
|
| ||| || |||||||| ||||||| ||||||||| || |||||| |
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|
| T |
22222600 |
acaaatctgcagattcaaaaactcaatgttggaacaacaacatttgtt |
22222647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 22222406 - 22222289
Alignment:
| Q |
66 |
aagtcactacaagttcgaaagtgtagaagacagaaaaaagagatacatttctaggattcgaaaga--ggccgcgtcttcatattcaaaagctcaatgatg |
163 |
Q |
| |
|
|||||||||||| | |||| | ||||||| | ||||||||||||||| |||||||| ||||||| | || ||| | ||||| ||| ||||||||| |
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|
| T |
22222406 |
aagtcactacaaatctgaaactctagaagagaaaaaaaagagatacatgtctaggatccgaaagagtgaccaaatctccggattcataagatcaatgatg |
22222307 |
T |
|
| Q |
164 |
gaacaactacttttgttc |
181 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
22222306 |
gaacaactacttttgttc |
22222289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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