View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19717_low_1 (Length: 656)

Name: NF19717_low_1
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19717_low_1
NF19717_low_1
[»] chr2 (6 HSPs)
chr2 (328-641)||(24773313-24773626)
chr2 (13-295)||(24773740-24774023)
chr2 (159-291)||(19005238-19005371)
chr2 (30-90)||(10601564-10601624)
chr2 (357-423)||(5545823-5545889)
chr2 (30-90)||(44655610-44655670)
[»] chr7 (4 HSPs)
chr7 (328-644)||(21933488-21933793)
chr7 (328-639)||(8562065-8562376)
chr7 (152-291)||(21933260-21933397)
chr7 (131-291)||(8561815-8561977)
[»] chr4 (11 HSPs)
chr4 (355-639)||(39477665-39477949)
chr4 (435-644)||(54005386-54005594)
chr4 (134-291)||(54005118-54005282)
chr4 (117-283)||(39477392-39477561)
chr4 (525-644)||(47560896-47561015)
chr4 (30-90)||(33436758-33436818)
chr4 (19-93)||(35218523-35218597)
chr4 (19-93)||(42577203-42577276)
chr4 (174-208)||(47555398-47555432)
chr4 (328-388)||(47560516-47560577)
chr4 (46-90)||(2266256-2266300)
[»] scaffold0690 (2 HSPs)
scaffold0690 (328-551)||(2980-3202)
scaffold0690 (177-280)||(3299-3402)
[»] chr6 (4 HSPs)
chr6 (328-551)||(15908895-15909118)
chr6 (102-292)||(15908617-15908810)
chr6 (30-90)||(12776646-12776706)
chr6 (30-90)||(9904392-9904452)
[»] chr1 (4 HSPs)
chr1 (328-572)||(15738701-15738945)
chr1 (165-228)||(15738497-15738564)
chr1 (44-90)||(47356825-47356871)
chr1 (30-90)||(34815109-34815169)
[»] chr8 (1 HSPs)
chr8 (19-89)||(28991856-28991926)
[»] chr5 (3 HSPs)
chr5 (13-90)||(28108928-28109005)
chr5 (21-93)||(28109265-28109337)
chr5 (30-90)||(41473121-41473181)
[»] chr3 (1 HSPs)
chr3 (37-93)||(37525548-37525604)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 328 - 641
Target Start/End: Complemental strand, 24773626 - 24773313
Alignment:
Q  328 aaataagtggaaaacaaaaaagaaaggggaaaacatcaagagttagctgaaatatttatctactattgtatccttaattatattcacattttgttttgtt 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||||| |||    
T  24773626 aaataagtggaaaacaaaaaagaaaggggaaaacatcaagagttagctgaaatatttatcttttattgtatccttaattatattttcattttgtttcgtt 24773527  T
Q  428 gtcaaaggttaagaaattagtttgcactttgcaattaaggcaagcgggaatagattaatcaaattagaaatggtaatgaaggaaaatggaaacagcggtg 527  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  24773526 gttaaaggttaagaaattagtttgcactttgcaaataaggcaagcgggaatagattaatcaaagtagaaattgtaatgaaggataatggaaacagcggtg 24773427  T
Q  528 atgacggcgaaaaagtaaatcaacaaagacatagacatacaacaataaaccatgtatcattttaaaaatcaacaagagacaagaaattgactttcaaatt 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||    
T  24773426 atgacggcgaaaaagtaaatcaacaaagacatagacatacaacaataaatcacgtatcagttcaaaaatcaacaagagacaagaaattgactttcaaatt 24773327  T
Q  628 caaagtgaaaaaac 641  Q
    | ||||||||||||    
T  24773326 cgaagtgaaaaaac 24773313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 24774023 - 24773740
Alignment:
Q  13 aaaatattgaatattcggacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatcgacttcctttccagtggcggag 112  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  24774023 aaaatattgaatattcggacgaaggatggatttaatatgaatttttaacacgcttaaaacttaagacagcaaaacatcgacttcctttccagtggcggag 24773924  T
Q  113 ttagaaaaaagttttgggtgagccgctgaaataaacaataa-gtataatataatttttattgttaatcttttatagttttaatttagttgtcttcaacaa 211  Q
    ||||||||||  |||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  24773923 ttagaaaaaaaatttgagtgagccgctaaaataaacaataaagtataatataattttttttgttaatcttttatagttttaatttagctgtcttcaacaa 24773824  T
Q  212 gaaatgtaacatagttaactcatatagtcttaacaattcaaaaacatactttatccttaatataagtaattggcatatattgtc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24773823 gaaatgtaacatagttaactcatatagtcttaacaattcaaaaacatactttatccttaatataagtaattggcatatattgtc 24773740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 159 - 291
Target Start/End: Complemental strand, 19005371 - 19005238
Alignment:
Q  159 atataatttttatt-gttaatcttttatagttttaatttagttgtcttcaacaagaaatgtaacatagttaactcatatagtcttaacaattcaaaaaca 257  Q
    ||||||||||| || || ||||||||||||||||| ||||||||||| ||||||||||||||| || | ||||||||||  || ||||||||||||||||    
T  19005371 atataattttttttcgtgaatcttttatagttttattttagttgtctccaacaagaaatgtaatatcgctaactcatattatcctaacaattcaaaaaca 19005272  T
Q  258 tactttatccttaatataagtaattggcatatat 291  Q
    ||||||||| ||||||||||||||||||||||||    
T  19005271 tactttatctttaatataagtaattggcatatat 19005238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 10601624 - 10601564
Alignment:
Q  30 gacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatc 90  Q
    ||||| ||||||||| |||||||||||||||||||| ||||| | ||||||  ||||||||    
T  10601624 gacaagggatggattaaatatgaatttttaacacgcctaaaatttaagacacgaaaacatc 10601564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 423
Target Start/End: Original strand, 5545823 - 5545889
Alignment:
Q  357 aaaacatcaagagttagctgaaatatttatctactattgtatccttaattatattcacattttgttt 423  Q
    ||||||||||||| ||||||||| || | ||| || ||||| |||||||||||||| | ||||||||    
T  5545823 aaaacatcaagagctagctgaaacatctctcttctgttgtaaccttaattatattctccttttgttt 5545889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 44655670 - 44655610
Alignment:
Q  30 gacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatc 90  Q
    ||||| ||||||||| ||||||||||||||| ||||  | ||||||||| | |||||||||    
T  44655670 gacaacggatggattaaatatgaatttttaatacgccaataactcaagaaaccaaaacatc 44655610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 328 - 644
Target Start/End: Original strand, 21933488 - 21933793
Alignment:
Q  328 aaataagtggaaaacaaaaaagaaaggggaaaacatcaagagttagctgaaatatttatctactattgtatccttaattatattcacattttgttttgtt 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| |||||||||| |||    
T  21933488 aaataagtggaaaacaaaaaagagaggggaaaacatcaagagttagttgaaacatttatcttccattgtatccttaattatattctcattttgtttcgtt 21933587  T
Q  428 gtcaaaggttaagaaattagtttgcactttgcaattaaggcaagcgggaatagattaatcaaattagaaatggtaatgaaggaaaatggaaacagcggtg 527  Q
       |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||   ||||| || |||||    
T  21933588 aagaaaggttaagaaattagtttgcactttgcaattaaggcaatcgggaatagaataatcaaattagaaatgctaatgaaggatgttggaagcaacggtg 21933687  T
Q  528 atgacggcgaaaaagtaaatcaacaaagacatagacatacaacaataaaccatgtatcattttaaaaatcaacaagagacaagaaattgactttcaaatt 627  Q
    | |||| ||||||||||           ||||| ||||||||||| ||| ||| ||||  || ||||||| ||||||||||||||||||| |||||||||    
T  21933688 acgacgacgaaaaagta-----------acataaacatacaacaacaaaacatctatcgattcaaaaatcgacaagagacaagaaattgattttcaaatt 21933776  T
Q  628 caaagtgaaaaaactga 644  Q
    | |||||||||||||||    
T  21933777 cgaagtgaaaaaactga 21933793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 328 - 639
Target Start/End: Original strand, 8562065 - 8562376
Alignment:
Q  328 aaataagtggaaaacaaaaaagaaaggggaaaacatcaagagttagctgaaatatttatctactattgtatccttaattatattcacattttgttttgtt 427  Q
    |||||| || |||||||||||||||||  ||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||| |||    
T  8562065 aaataaatgaaaaacaaaaaagaaaggaaaaaacatcaagagttagctgaaacatttatcttctgttgtatccttaattatattctcattttgtttcgtt 8562164  T
Q  428 gtcaaaggttaagaaattagtttgcactttgcaattaaggcaagcgggaatagattaatcaaattagaaatggtaatgaaggaaaatggaaacagcggtg 527  Q
      |||| |||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||| ||  ||||||||||   | |||||| |  ||    
T  8562165 accaaaagttaagaaattagtttgcactttgcaatcaaggtaagtgagaatagattaatcaaattagatattctaatgaaggatgttcgaaacaacaatg 8562264  T
Q  528 atgacggcgaaaaagtaaatcaacaaagacatagacatacaacaataaaccatgtatcattttaaaaatcaacaagagacaagaaattgactttcaaatt 627  Q
    | |||| ||||||||||||||||||||||||| || ||||||||| ||| ||  ||||| || |||||||||||| | |||||||||| |||||||||||    
T  8562265 acgacgacgaaaaagtaaatcaacaaagacatggatatacaacaacaaaacacctatcaattcaaaaatcaacaacaaacaagaaattaactttcaaatt 8562364  T
Q  628 caaagtgaaaaa 639  Q
    | ||||||||||    
T  8562365 cgaagtgaaaaa 8562376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 152 - 291
Target Start/End: Original strand, 21933260 - 21933397
Alignment:
Q  152 aagtataatataatttttattgttaatcttttatagttttaatttagttgtcttcaacaagaaatgtaacatagttaactcatatagtcttaacaattca 251  Q
    ||||| |||||||||||| ||  |||||||||||| ||||| ||||||||||||||| ||| ||||||| |||||| |||||| |||||||||||||||     
T  21933260 aagtacaatataatttttttt--taatcttttataattttattttagttgtcttcaataaggaatgtaatatagttgactcatgtagtcttaacaattcg 21933357  T
Q  252 aaaacatactttatccttaatataagtaattggcatatat 291  Q
    |||||||  ||||||||||||| |||||||| ||| ||||    
T  21933358 aaaacatgttttatccttaatacaagtaatttgcaaatat 21933397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 131 - 291
Target Start/End: Original strand, 8561815 - 8561977
Alignment:
Q  131 tgagccgctgaaataaacaat-aagtataatataatttttattgtt-aatcttttatagttttaatttagttgtcttcaacaagaaatgtaacatagtta 228  Q
    ||||||| | ||||||||||| ||||| |||||||||| | |||   ||| |||||| |||||| |||| |||||||||||||||||||||| |||||||    
T  8561815 tgagccgttaaaataaacaatgaagtacaatataatttattttggcgaatattttatcgttttattttaattgtcttcaacaagaaatgtaatatagtta 8561914  T
Q  229 actcatatagtcttaacaattcaaaaacatactttatccttaatataagtaattggcatatat 291  Q
    || || ||| || |||||||  |||||  ||||||||| ||||||||||||||||| ||||||    
T  8561915 acccacatattcctaacaatataaaaatgtactttatcattaatataagtaattggaatatat 8561977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 4e-83; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 355 - 639
Target Start/End: Original strand, 39477665 - 39477949
Alignment:
Q  355 ggaaaacatcaagagttagctgaaatatttatctactattgtatccttaattatattcacattttgttttgttgtcaaaggttaagaaattagtttgcac 454  Q
    |||||||| |||||||||||||||| |||||||| |  || ||||||||||||||||| |||||||||| |||  ||||||||||||||||||||| |||    
T  39477665 ggaaaacaacaagagttagctgaaacatttatcttccgttctatccttaattatattctcattttgtttcgttaccaaaggttaagaaattagttttcac 39477764  T
Q  455 tttgcaattaaggcaagcgggaatagattaatcaaattagaaatggtaatgaaggaaaatggaaacagcggtgatgacggcgaaaaagtaaatcaacaaa 554  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||| || |||||| ||| || |||||  |||||||||||    
T  39477765 tctgcaattaaggcgagcgggaatagattaatcaaattagaaatggtaatgaaggatattcgaagcaacggtgacgacagcaaaaaaacaaatcaacaaa 39477864  T
Q  555 gacatagacatacaacaataaaccatgtatcattttaaaaatcaacaagagacaagaaattgactttcaaattcaaagtgaaaaa 639  Q
    |||||| ||||||||||| | | ||  ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39477865 gacatatacatacaacaacagaacacttatcaattcaaaaatcaacaagagataagaaattgactttcaaattcaaagtgaaaaa 39477949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 435 - 644
Target Start/End: Original strand, 54005386 - 54005594
Alignment:
Q  435 gttaagaaattagtttgcactttgcaattaaggcaagcgggaatagattaatcaaattagaaatggtaatgaaggaaaatggaaacagcggtgatgacgg 534  Q
    ||||||||||||||||||| |||||||||||| ||| |   ||||||||||| |||||||||||| ||| ||||||   | ||| || |||||| || |     
T  54005386 gttaagaaattagtttgcattttgcaattaagacaaacataaatagattaattaaattagaaatgctaacgaaggatgttcgaagcaacggtgacgatga 54005485  T
Q  535 cgaaaaagtaaatcaacaaagacatagacatacaacaataaaccatgtatcattttaaaaatcaacaagagacaagaaattgactttcaaattcaaagtg 634  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||| |||||||| || || ||||| |||||| |||||    
T  54005486 cgaaaaac-aaatcaacaaagacatagacatacaacaacaaaccatttatcaattcaaaaatcaactagagacaaaaatttaacttttaaattcgaagtg 54005584  T
Q  635 aaaaaactga 644  Q
    ||||||||||    
T  54005585 aaaaaactga 54005594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 134 - 291
Target Start/End: Original strand, 54005118 - 54005282
Alignment:
Q  134 gccgctgaaataaacaataa-gtataatataatttt--tattgttaatcttttatagttttaatttagttgtcttcaacaagaaatgtaacatagttaac 230  Q
    |||||| ||||||||||||| ||||||||| |||||  | || | |||||| |||||||||| ||||||| |||||||||| || |||||  ||||||||    
T  54005118 gccgctaaaataaacaataaagtataatatcattttatttttatgaatcttctatagttttattttagttatcttcaacaacaactgtaatttagttaac 54005217  T
Q  231 tcatatagtcttaacaattcaaaaac----atactttatccttaatataagtaattggcatatat 291  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  54005218 tcatatagtcctaacaattcaaaaacatatatactttatccttaatataagtaattggcatatat 54005282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 117 - 283
Target Start/End: Original strand, 39477392 - 39477561
Alignment:
Q  117 aaaaaagttttgggtgagccgctgaaataaacaataa-gtataatataatttttattgttaatc-----ttttatagttttaatttagttgtcttcaaca 210  Q
    |||||| | ||||||||||| || ||||||||||||| |||||| ||||||||| ||  ||||      ||||||||||||| |||||||||||||||||    
T  39477392 aaaaaaatcttgggtgagccactaaaataaacaataaagtataaaataatttttttt--taatgactttttttatagttttattttagttgtcttcaaca 39477489  T
Q  211 agaaatgtaacatagttaactcatatagtcttaacaattcaaaaacatactttatccttaatataagtaattg 283  Q
    | |||||||| ||||||||||| ||||||| ||||||| | |||||||| |||||||||||||||||||||||    
T  39477490 aaaaatgtaatatagttaactcttatagtcctaacaatacgaaaacata-tttatccttaatataagtaattg 39477561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 525 - 644
Target Start/End: Original strand, 47560896 - 47561015
Alignment:
Q  525 gtgatgacggcgaaaaagtaaatcaacaaagacatagacatacaacaataaaccatgtatcattttaaaaatcaacaagagacaagaaattgactttcaa 624  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||||| ||| ||  ||||| || ||||||||||||| |||||||||||  |||||||    
T  47560896 gtgacgacgacgaaaaagtaaatcaacaaagatatagacatacaacaacaaaacacctatcaattcaaaaatcaacaagtgacaagaaattacctttcaa 47560995  T
Q  625 attcaaagtgaaaaaactga 644  Q
    |||||||||| |||||||||    
T  47560996 attcaaagtggaaaaactga 47561015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 33436818 - 33436758
Alignment:
Q  30 gacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatc 90  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||| ||||||  ||||||||    
T  33436818 gacaaaggacggattaaatatgaatttttaacacgcctaaaacttaagacacgaaaacatc 33436758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 35218597 - 35218523
Alignment:
Q  19 ttgaatattcggacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatcgac 93  Q
    |||||| ||| ||||||||  ||||| |||||| ||||||||| ||| ||||||| |||||| ||||||||||||    
T  35218597 ttgaattttctgacaaagggcggattgaatatgcatttttaacgcgcctaaaacttaagacaccaaaacatcgac 35218523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 42577276 - 42577203
Alignment:
Q  19 ttgaatattcggacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatcgac 93  Q
    |||||| ||| ||||| ||| | ||| ||||||||||||||| |||| |||||||||||| | ||||||||||||    
T  42577276 ttgaattttccgacaagggacgaattaaatatgaatttttaa-acgcctaaaactcaagaaaccaaaacatcgac 42577203  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 47555398 - 47555432
Alignment:
Q  174 ttaatcttttatagttttaatttagttgtcttcaa 208  Q
    ||||||||||||||||||| |||||||||||||||    
T  47555398 ttaatcttttatagttttattttagttgtcttcaa 47555432  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 47560516 - 47560577
Alignment:
Q  328 aaataagtggaaaacaaaaaagaaaggggaaaacatc-aagagttagctgaaatatttatct 388  Q
    ||||||||||||||||||| ||||| | ||||||||| ||||| || | |||||||||||||    
T  47560516 aaataagtggaaaacaaaagagaaaagagaaaacatctaagagctaacagaaatatttatct 47560577  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 2266300 - 2266256
Alignment:
Q  46 aatatgaatttttaacacgcttaaaactcaagacatcaaaacatc 90  Q
    |||||||||||||||  ||| |||||||||||||| |||||||||    
T  2266300 aatatgaatttttaatgcgcctaaaactcaagacaccaaaacatc 2266256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 328 - 551
Target Start/End: Complemental strand, 3202 - 2980
Alignment:
Q  328 aaataagtggaaaacaaaaaagaaaggggaaaacatcaagagttagctgaaatatttatctactattgtatccttaattatattcacattttgttttgtt 427  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| ||||| || ||||| || |||||||  ||||||||||  |||||||||| |||    
T  3202 aaataagtgaaaaacaaaaaagaaaggggaaaacatcaagagctag-tgaaacatatatcttctgttgtatctctaattatatttgcattttgtttcgtt 3104  T
Q  428 gtcaaaggttaagaaattagtttgcactttgcaattaaggcaagcgggaatagattaatcaaattagaaatggtaatgaaggaaaatggaaacagcggtg 527  Q
    | ||| ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||  ||||||||||   | ||| || || ||    
T  3103 gccaatggttaagaaattagtttacacttttcaattaaggcaagcgagaatagattaatcaaattagaaattctaatgaaggatgttcgaagcaacgctg 3004  T
Q  528 atgacggcgaaaaagtaaatcaac 551  Q
    ||||||||||||||| ||||||||    
T  3003 atgacggcgaaaaagcaaatcaac 2980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 3402 - 3299
Alignment:
Q  177 atcttttatagttttaatttagttgtcttcaacaagaaatgtaacatagttaactcatatagtcttaacaattcaaaaacatactttatccttaatataa 276  Q
    ||||||| |||||||| |||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| || | |||||| |||||| |||||||||    
T  3402 atcttttctagttttattttagttgtctttaacaagaaatgtaatataattaactcatatagtattaacaactctagaacatattttatcgttaatataa 3303  T
Q  277 gtaa 280  Q
    ||||    
T  3302 gtaa 3299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 328 - 551
Target Start/End: Original strand, 15908895 - 15909118
Alignment:
Q  328 aaataagtggaaaacaaaaaagaaa-ggggaaaacatcaagagttagctgaaatatttatctactattgtatccttaattatattcacattttgttttgt 426  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| || ||||| || |||||||  ||||||||||| |||||||||| ||    
T  15908895 aaataagtggaaaacaaaaaagaaaaggggaaaacatcaagagctag-tgaaacatatatcttctgttgtatctctaattatattcccattttgtttcgt 15908993  T
Q  427 tgtcaaaggttaagaaattagtttgcactttgcaattaaggcaagcgggaatagattaatcaaattagaaatggtaatgaaggaaaatggaaacagcggt 526  Q
    || ||| ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||  ||||||||||   |  || || || |    
T  15908994 tgccaatggttaagaaattagtttacacttttcaattaaggcaagcgagaatagattaatcaaattagaaattctaatgaaggatgttcaaagcaacgct 15909093  T
Q  527 gatgacggcgaaaaagtaaatcaac 551  Q
    || ||||||||||||| ||||||||    
T  15909094 gacgacggcgaaaaagcaaatcaac 15909118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 102 - 292
Target Start/End: Original strand, 15908617 - 15908810
Alignment:
Q  102 cagtggcggagttagaaaa-aagttttgggtgagccgctgaaataaacaataa-gtataatataatttttattgtta-atcttttatagttttaatttag 198  Q
    |||||||||||  |||||| |||| | ||||| | |||| ||||||||||||| ||| |||||||| ||| ||| |  |||||||||||||||| |||||    
T  15908617 cagtggcggagccagaaaagaagtctcgggtgggtcgctaaaataaacaataaagtacaatataatattttttggtgtatcttttatagttttattttag 15908716  T
Q  199 ttgtcttcaacaagaaatgtaacatagttaactcatatagtcttaacaattcaaaaacatactttatccttaatataagtaattggcatatatt 292  Q
    ||||||| |||||||||||||| ||| |||||||||||||| ||||||| || | |||||| |||||| ||||||||||||| || ||||||||    
T  15908717 ttgtctttaacaagaaatgtaatataattaactcatatagtattaacaactctagaacatattttatcgttaatataagtaaatgacatatatt 15908810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 12776646 - 12776706
Alignment:
Q  30 gacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatc 90  Q
    ||||| ||||||||| |||||||||||||||| ||| ||||||| ||||||  ||||||||    
T  12776646 gacaagggatggattaaatatgaatttttaacgcgcctaaaacttaagacacgaaaacatc 12776706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 9904392 - 9904452
Alignment:
Q  30 gacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatc 90  Q
    ||||||||||||||| |||||||||||||||  |||  | ||||||||| | |||||||||    
T  9904392 gacaaaggatggattaaatatgaatttttaatgcgccaataactcaagaaaccaaaacatc 9904452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 328 - 572
Target Start/End: Original strand, 15738701 - 15738945
Alignment:
Q  328 aaataagtggaaaacaaaaaagaaaggggaaaacatcaagagttagctgaaatatttatctactattgtatccttaattatattcacattttgttttgtt 427  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||| |  || ||||||||||||||||   ||||||| | |||    
T  15738701 aaataagtggaaaacaaaaaagaaaggggaaaacatcaagagctagctgaagcatttatcttccgttatatccttaattatattattattttgtctcgtt 15738800  T
Q  428 gtcaaaggttaagaaattagtttgcactttgcaattaaggcaagcgggaatagattaatcaaattagaaatggtaatgaaggaaaatggaaacagcggtg 527  Q
      |||||||||||||||||||||||||||||||||||||| || |  ||||||||||||||||||| ||||| ||||||| ||     |||  | |  ||    
T  15738801 accaaaggttaagaaattagtttgcactttgcaattaaggtaaacaagaatagattaatcaaattaaaaatgttaatgaaagatgtccgaagaaacaatg 15738900  T
Q  528 atgacggcgaaaaagtaaatcaacaaagacatagacatacaacaa 572  Q
    | ||| | |||||||||||||||||||| ||||||||||||||||    
T  15738901 acgacagtgaaaaagtaaatcaacaaagtcatagacatacaacaa 15738945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 15738497 - 15738564
Alignment:
Q  165 tttttattgttaatcttttatagttttaatttagt----tgtcttcaacaagaaatgtaacatagtta 228  Q
    |||||||| || |||||||||||||||| |||| |    ||||||||||||||||||||| |||||||    
T  15738497 tttttattttttatcttttatagttttattttaatcagctgtcttcaacaagaaatgtaatatagtta 15738564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 47356825 - 47356871
Alignment:
Q  44 ttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatc 90  Q
    |||||||||||||||||| ||| ||||||| ||||||| ||||||||    
T  47356825 ttaatatgaatttttaacgcgcctaaaacttaagacatgaaaacatc 47356871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 34815169 - 34815109
Alignment:
Q  30 gacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatc 90  Q
    ||||||||| ||||| |||||||||||||||| ||| ||||| | ||||||  ||||||||    
T  34815169 gacaaaggacggattaaatatgaatttttaacgcgcctaaaatttaagacacgaaaacatc 34815109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 28991856 - 28991926
Alignment:
Q  19 ttgaatattcggacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacat 89  Q
    |||||| ||| ||||| ||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||    
T  28991856 ttgaattttccgacaagggacggattaaatatgaatttttaacacgcataaaactcatgacatcaaaacat 28991926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 28108928 - 28109005
Alignment:
Q  13 aaaatattgaatattcggacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatc 90  Q
    ||||| |||||| ||  ||||| ||| ||||| |||||||||||||||| | | ||||||||||||||  ||||||||    
T  28108928 aaaattttgaattttttgacaagggacggattaaatatgaatttttaacgcacctaaaactcaagacaaaaaaacatc 28109005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 28109265 - 28109337
Alignment:
Q  21 gaatattcggacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatcgac 93  Q
    |||| ||| ||||| ||||||||| |||||||| ||||||   ||  ||||||||||| ||||||||||||||    
T  28109265 gaattttccgacaacggatggattaaatatgaacttttaatgtgccaaaaactcaagaaatcaaaacatcgac 28109337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 41473181 - 41473121
Alignment:
Q  30 gacaaaggatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatc 90  Q
    ||||||| | ||||| |||||||||||||||| ||| ||||||||| ||||  ||||||||    
T  41473181 gacaaagaacggattaaatatgaatttttaacgcgcctaaaactcatgacactaaaacatc 41473121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 37525548 - 37525604
Alignment:
Q  37 gatggatttaatatgaatttttaacacgcttaaaactcaagacatcaaaacatcgac 93  Q
    |||| ||| |||||||||||||||| | | ||||| |||||||||||||| ||||||    
T  37525548 gatgaattaaatatgaatttttaacgcacctaaaattcaagacatcaaaatatcgac 37525604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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