View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19717_low_11 (Length: 393)
Name: NF19717_low_11
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 31060227 - 31060603
Alignment:
| Q |
1 |
tttaacgtataatcttctaaaccatcgaagctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggt |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060227 |
tttaacatataatcttctaaaccatcgaagctgattctcgattcctgctgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggt |
31060326 |
T |
|
| Q |
101 |
cttgttttgtcctctcagataagtaacaaccaaggactttccccaataagcataaaaatatttagagagttcactaaaatcgtctataagacttggttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060327 |
cttgttttgtcctctcagataagtaacaaccaaggactttccccaataagcataaaaatatttagagagttcactaaaatcgtctataagacttggttga |
31060426 |
T |
|
| Q |
201 |
ccaaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaagtcgttcatc |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31060427 |
ccaaagcatgccaactgaaaagttcaagtgactggttttcgaccatttctaccattgtgaagacatggtcagcactaagtgatttgagaaggtgttcatc |
31060526 |
T |
|
| Q |
301 |
tctggttgtaaaaatcaatacagttcgcgaaccaaagaacttacaatttacacacagggcttttaatttcccaaact |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060527 |
tctggttgtaaaaatcaatacagttcgcgaaccaaagaacttacaatttacacacagggcttttaatttcccaaact |
31060603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 203 - 368
Target Start/End: Original strand, 3400217 - 3400382
Alignment:
| Q |
203 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaagtcgttcatctc |
302 |
Q |
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||||||||||| | |||||||||||| ||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| ||| |||||| |
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| T |
3400217 |
aaagcatgccaacagaaaagttcaagggactggtcttcgtccatttctgtcattgtgaagatatggtcaccactaagtgatttgagaaggcgtccatctc |
3400316 |
T |
|
| Q |
303 |
tggttgtaaaaatcaatacagttcgcgaaccaaagaacttacaatttacacacagggcttttaatt |
368 |
Q |
| |
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| ||||||| |||||||||| ||| |||||| || |||||| || | |||||||| |||||||| |
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| T |
3400317 |
tagttgtaataatcaatacacttcccgaaccgaacaacttaggatctgcacacaggttttttaatt |
3400382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 203 - 368
Target Start/End: Complemental strand, 31174331 - 31174166
Alignment:
| Q |
203 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaagtcgttcatctc |
302 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||| || ||||||||| ||||||||||| |||||| |||||||||| |||||||| ||| |||||| |
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| T |
31174331 |
aaagcatgccaacagaaaagttcaagggactggtatttgtccatttccgtcattgtgaagatatggtcgtcactaagtgagttgagaaggcgtgcatctc |
31174232 |
T |
|
| Q |
303 |
tggttgtaaaaatcaatacagttcgcgaaccaaagaacttacaatttacacacagggcttttaatt |
368 |
Q |
| |
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| ||||||| |||||||||| ||| |||||| || |||||| || | |||||||||||||||||| |
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|
| T |
31174231 |
tagttgtaataatcaatacacttcccgaaccgaacaacttaggatctgcacacagggcttttaatt |
31174166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 3326375 - 3326496
Alignment:
| Q |
18 |
taaaccatcgaagctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggtcttgttttgtcctctca |
117 |
Q |
| |
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|||||||||| |||| |||||| || || |||||||||| | ||||||||| ||||||||||||| ||| |||| || |||||||||||||||||| |
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| T |
3326375 |
taaaccatcgtagctaattctcagtttctcttgcacttgatcattgggaattctctctaatttcaagagtacacttatccattcttgttttgtcctctca |
3326474 |
T |
|
| Q |
118 |
gataagtaacaaccaaggactt |
139 |
Q |
| |
|
||||||| |||||||||||| |
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| T |
3326475 |
tataagtatgaaccaaggactt |
3326496 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 31174547 - 31174462
Alignment:
| Q |
7 |
gtataatcttctaaaccatcgaagctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcact |
92 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
31174547 |
gtataatcttctaagccgtcgtagctgattctcagtttctgttgcacttgattgttgggaattttctctaattttgatagtgcact |
31174462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 3400001 - 3400133
Alignment:
| Q |
7 |
gtataatcttctaaaccatcgaagctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggtcttgtt |
106 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| || ||||||||||| | |||||||||||||||||||| |||||||||| ||| ||| | |
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| T |
3400001 |
gtataatcttgtaaaccatcatagctgattctcaatatctgttgcacttcattgttgggaattttctctaattttgatagtgcacttctccattctcggg |
3400100 |
T |
|
| Q |
107 |
ttgtcctctcagataagtaacaaccaaggactt |
139 |
Q |
| |
|
||||||||| |||||||||| |||||||||| |
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|
| T |
3400101 |
ttgtcctctttgataagtaacttccaaggactt |
3400133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 20810804 - 20810671
Alignment:
| Q |
6 |
cgtataatcttctaaaccatcgaagctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggtcttgt |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || ||||||||| | | |||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
20810804 |
cgtataatcttctaaaccatcatagctgattctcaatatctgttgcacatcattgttgggaattttctctaattttgatagtgcacatctccattcttgt |
20810705 |
T |
|
| Q |
106 |
tttgtcctctcagataagtaacaaccaaggactt |
139 |
Q |
| |
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| ||||||||||||||||||| |||||||||| |
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| T |
20810704 |
tccgtcctctcagataagtaacgtccaaggactt |
20810671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 368
Target Start/End: Complemental strand, 20810587 - 20810422
Alignment:
| Q |
203 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaagtcgttcatctc |
302 |
Q |
| |
|
|||||||| || |||||||||||||| || |||| || ||||||||| ||| ||| ||||||||||| | ||| ||| |||||||| ||| ||||| |
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|
| T |
20810587 |
aaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtagacatggtcaactttaaatgacttgagaaggcgtaaatctc |
20810488 |
T |
|
| Q |
303 |
tggttgtaaaaatcaatacagttcgcgaaccaaagaacttacaatttacacacagggcttttaatt |
368 |
Q |
| |
|
| || |||| |||||||||| | | |||||| || |||||| |||| ||||||| |||||||||| |
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|
| T |
20810487 |
tagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttttaatt |
20810422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 368
Target Start/End: Complemental strand, 20836942 - 20836777
Alignment:
| Q |
203 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaagtcgttcatctc |
302 |
Q |
| |
|
|||||||| || |||||||||||||| || |||| || ||||||||| ||| ||| ||||||||||| | ||| ||| |||||||| ||| ||||| |
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|
| T |
20836942 |
aaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtagacatggtcaactttaaatgacttgagaaggcgtaaatctc |
20836843 |
T |
|
| Q |
303 |
tggttgtaaaaatcaatacagttcgcgaaccaaagaacttacaatttacacacagggcttttaatt |
368 |
Q |
| |
|
| || |||| |||||||||| | | |||||| || |||||| |||| ||||||| |||||||||| |
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|
| T |
20836842 |
tagtggtaataatcaatacactccccgaacctaacaacttaggatttgcacacagtgcttttaatt |
20836777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 20837159 - 20837026
Alignment:
| Q |
6 |
cgtataatcttctaaaccatcgaagctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggtcttgt |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || ||||||||| | | |||||||||||||||||| | ||||||| ||| |||| | |
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|
| T |
20837159 |
cgtataatcttctaaaccatcatagctgattctcaatatctgttgcacatcattgttgggaattttctctaatatttgtagtgcatctctccattctttt |
20837060 |
T |
|
| Q |
106 |
tttgtcctctcagataagtaacaaccaaggactt |
139 |
Q |
| |
|
| |||||||||||||||||||| |||||||||| |
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|
| T |
20837059 |
tccgtcctctcagataagtaacatccaaggactt |
20837026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 368
Target Start/End: Original strand, 8373327 - 8373489
Alignment:
| Q |
203 |
aaagcatgccatctgaaaagttcaagtgactggttttcgtccatttctaccattgtgaagacatggtcagcactaagtgatttgagaagtcgttcatctc |
302 |
Q |
| |
|
||||||||||| |||||||||||||| |||| ||||| |||||||| | |||||||||||| || ||||||||||| | |||| | | | ||||| |
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|
| T |
8373327 |
aaagcatgccagctgaaaagttcaagggactcgtttttatccatttcaatcattgtgaagacgcgg---gcactaagtgaatcgagatggcttcgatctc |
8373423 |
T |
|
| Q |
303 |
tggttgtaaaaatcaatacagttcgcgaaccaaagaacttacaatttacacacagggcttttaatt |
368 |
Q |
| |
|
| ||||||| |||||||||| ||| |||||||| |||||| |||| ||| ||| |||||||||| |
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|
| T |
8373424 |
tagttgtaataatcaatacacttcctgaaccaaacaacttaggatttccacccagagcttttaatt |
8373489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 8373111 - 8373243
Alignment:
| Q |
7 |
gtataatcttctaaaccatcgaagctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggtcttgtt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || |||| |||||| |||||||||||| |||||| ||| |||||| ||| ||||||| |
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|
| T |
8373111 |
gtataatcttctaaaccatcatagctgattctcaatatctgtagcacttcgttgttgggaattttcgttaattttgataatgcacttctccattcttgtt |
8373210 |
T |
|
| Q |
107 |
ttgtcctctcagataagtaacaaccaaggactt |
139 |
Q |
| |
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|||||||| |||||||||| | |||||||||| |
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|
| T |
8373211 |
ctgtcctcttagataagtaagatccaaggactt |
8373243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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