View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_14 (Length: 360)
Name: NF19717_low_14
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 2480391 - 2480044
Alignment:
| Q |
13 |
gataattctcacataggagtctggcaaaaaggagcaggatcacattctgactctaattggatcttaagggtggagcttggnnnnnnncatgaagatagtc |
112 |
Q |
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| T |
2480391 |
gataattctcacataggagtctggcaaaaaggagcaggatcacattctgactctaattggatcttaagggtggagcttggaaagaaacatgaagatagtc |
2480292 |
T |
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| Q |
113 |
atgaatcaaattatgtgtcatcatcagaaaaatcagcacctaataatagtacaattgttggtgattgtgctgagaaaaatgggatagaacatgaagagga |
212 |
Q |
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| T |
2480291 |
atgaatcaaattatgtgtcatcatcagaaaaatcagcacctaataatagtacaattgttggtgattgtgctgagaaaaatgggatagaacatgaagagga |
2480192 |
T |
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| Q |
213 |
tattgttaccatgcagatgattgaagagctacttaattgaaacttcaagtaaccttcaggagtctgatgttacttctataatatataatattaataacat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2480191 |
tattgttaccatgcagatgattgaagagctacttaattgaaacttcaagtaaccttcaggagtctgatgttacttctataatatataatattaataacat |
2480092 |
T |
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| Q |
313 |
actattgtactgtataaaagaactcctttttaggttactctcaaatca |
360 |
Q |
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| T |
2480091 |
actattgtactgtattaaagaactcctttttaggttactctgaaatca |
2480044 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 49532845 - 49532904
Alignment:
| Q |
13 |
gataattctcacataggagtctggcaaaaaggagcaggatcacattctgactctaattgg |
72 |
Q |
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|||||||||||||| ||||| ||||||||| |||| ||| |||||||||| ||||||||| |
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| T |
49532845 |
gataattctcacattggagtgtggcaaaaaagagctggaccacattctgattctaattgg |
49532904 |
T |
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