View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19717_low_15 (Length: 353)

Name: NF19717_low_15
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19717_low_15
NF19717_low_15
[»] chr1 (2 HSPs)
chr1 (1-337)||(14597494-14597830)
chr1 (2-337)||(14610675-14611010)
[»] chr4 (1 HSPs)
chr4 (8-336)||(29917858-29918186)
[»] chr7 (2 HSPs)
chr7 (23-347)||(44634168-44634492)
chr7 (31-334)||(47919046-47919349)
[»] chr3 (1 HSPs)
chr3 (25-162)||(41490529-41490666)
[»] chr5 (1 HSPs)
chr5 (25-330)||(12193221-12193526)
[»] chr2 (2 HSPs)
chr2 (80-141)||(15418526-15418587)
chr2 (16-81)||(15418073-15418138)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 14597494 - 14597830
Alignment:
Q  1 atacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14597494 atacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttg 14597593  T
Q  101 tgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacatac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14597594 tgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacatac 14597693  T
Q  201 cttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  14597694 cttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctcgaactagtgcatt 14597793  T
Q  301 catggcaccagctttcttgttgtgatcataacctggc 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  14597794 catggcaccagctttcttgttgtgatcataacctggc 14597830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 2 - 337
Target Start/End: Complemental strand, 14611010 - 14610675
Alignment:
Q  2 tacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgt 101  Q
    ||||||||||| | ||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| || |||||||    
T  14611010 tacaatgcaaatctcctgaacatgcacccggttcccacataaaatggaccttggagaccatcaagggctctcatgttcccgtcaaagaacacggtgttgt 14610911  T
Q  102 gattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacatacc 201  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  14610910 gattggcatagcgatctgagggatcaataccttcaaatctttgagggaactgaatatagcatatgtcttcgccacctttgtccatcatgaaacacattcc 14610811  T
Q  202 ttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattc 301  Q
    |||   ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| ||| | |||||||    
T  14610810 ttcttttactgccttgcaattatagatatagtgatcacaatcaagattgagaatgaatggcccatttgataggactgcagatgctcgaacaagtgcattc 14610711  T
Q  302 atggcaccagctttcttgttgtgatcataacctggc 337  Q
    |||||||| ||||||||||| |||||||||||||||    
T  14610710 atggcaccggctttcttgttatgatcataacctggc 14610675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 29917858 - 29918186
Alignment:
Q  8 gcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattgg 107  Q
    |||||||  |||||||  || |||||||| ||||| | ||| |||||||| ||||| ||||||||||||||  | |||||||| || ||||||||||| |    
T  29917858 gcaaaccttctaaacagacagccggttcctacatagactgggccttgaagtccatcaagggctctcatgttaacatcaaagaagacggtgttgtgattag 29917957  T
Q  108 catagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacg 207  Q
    |||| | ||| |||||||||||||| ||||| ||||| ||||| || | |||||| | |   || |||||    |||| ||| |||||||||||||| |     
T  29917958 catatctatcagagggatcaataccctcaaacctttgagggaattggacatagcagaggcgatcaccaccacgatccatcataaagcacataccttccct 29918057  T
Q  208 tactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggca 307  Q
     | ||| ||  | || || |||||||||||||| || || || || || || || || || |||| ||  || || |||||||| ||||||||||||||     
T  29918058 cattgctttggagttgtatatatagtgatcacagtcgaggttaagtataaagggaccgttggacatgacagccgaggctctaaccaatgcattcatggcc 29918157  T
Q  308 ccagctttcttgttgtgatcataacctgg 336  Q
    |||||||| ||||||||||| ||||||||    
T  29918158 ccagcttttttgttgtgatcgtaacctgg 29918186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 44634492 - 44634168
Alignment:
Q  23 atgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagg 122  Q
    ||||| || ||||| ||||| | ||||||||| | |||||| || ||||||||| |  | |||||||| || |||||||| || ||||| |||||   ||    
T  44634492 atgcagccagttccaacatacattggaccttgtaaaccatcaagagctctcatgctcacatcaaagaacacggtgttgtggtttgcatatcgatcactgg 44634393  T
Q  123 gatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaatt 222  Q
    | |||||||||||||| ||||| ||||| |||| ||| |||||    || |||||| |||| ||||| |||||||||||||| |  |  |||    | ||    
T  44634392 ggtcaataccttcaaacctttgagggaattgaacataacatatcctgtcaccacctctgtcaagcataaagcacataccttccctcaaggccaaggagtt 44634293  T
Q  223 atagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttg 322  Q
     ||||| || |||||||| ||||||||||||| |||||||||||| |||| ||  |||   | || ||| |  ||||||||||| |||||||||||||||    
T  44634292 gtagatgtaatgatcacagtcaagattgagaacgaatggtccattggacatgacagcactagttcgaacaagagcattcatggcgccagctttcttgttg 44634193  T
Q  323 tgatcataacctggcttcatctcac 347  Q
    |||||||| || ||| || ||||||    
T  44634192 tgatcatatcccggcctcttctcac 44634168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 334
Target Start/End: Complemental strand, 47919349 - 47919046
Alignment:
Q  31 ggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaata 130  Q
    |||||| ||||| || || |||||||| ||||| ||||||||||||||  | |||||||| |||||||||||||| ||||| | ||| ||||||||||||    
T  47919349 ggttcctacatagaacgggccttgaagtccatcaagggctctcatgttaacatcaaagaagacagtgttgtgattagcatatctatcagagggatcaata 47919250  T
Q  131 ccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattatagatat 230  Q
    || ||||| || |||||||| || | |||||| | |   || |||||    |||| ||| |||||||||||||| |  | ||| ||  | || || ||||    
T  47919249 ccctcaaacctctgggggaattggacatagcagaggcgatccccaccacgatccatcataaagcacataccttccctcattgctttggagttgtaaatat 47919150  T
Q  231 agtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtgatcata 330  Q
    |||||||||| || |||||||| || || || || || |||| ||  || || ||||| || ||||||||||  || |||||||| ||||||||||| ||    
T  47919149 agtgatcacagtcgagattgagtataaaaggaccgttggacatgacagctgaagctctgaccaatgcattcactgccccagcttttttgttgtgatcgta 47919050  T
Q  331 acct 334  Q
    ||||    
T  47919049 acct 47919046  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 41490529 - 41490666
Alignment:
Q  25 gcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgaggga 124  Q
    ||||||||| || ||||| |  ||||| |||| ||||||||| |||| ||| ||  | |||||||| |||||||||||||||||||| ||||| || ||     
T  41490529 gcatccggtaccaacatatacaggaccctgaataccatcgagagctcgcatattgacatcaaagaagacagtgttgtgattggcataccgatctgatggg 41490628  T
Q  125 tcaataccttcaaatctttgggggaactgaatatagca 162  Q
    ||||| ||||||||||||||||| || |||| ||||||    
T  41490629 tcaattccttcaaatctttggggaaattgaacatagca 41490666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 12193221 - 12193526
Alignment:
Q  25 gcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgaggga 124  Q
    |||||| || || |||||||  ||||| |||| ||||||||| |||||||| ||  | |||||||| |||||||| ||||||||||| ||||| || ||     
T  12193221 gcatccagtaccaacataaacaggaccctgaataccatcgagagctctcatattgacatcaaagaagacagtgttatgattggcataccgatctgatggg 12193320  T
Q  125 tcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattat 224  Q
    || || |||||||| ||||| || || |||| |||||  || |  || ||| |   ||||| |||  ||||||||||||| |  | ||||| | | ||||    
T  12193321 tcgattccttcaaacctttgaggaaattgaacatagctgatcttgtccccatcgcggtccatcatatagcacataccttccctgattgcctcagagttat 12193420  T
Q  225 agatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtg 324  Q
    | || || || ||||| |||||||| || ||||| || ||||| ||||  |  || || |||| ||| || ||||||||||| || |||||||| |||||    
T  12193421 atatgtaatggtcacagtcaagattaagtatgaaaggaccattagacattacggctgaagctcgaaccaaggcattcatggcccccgctttcttattgtg 12193520  T
Q  325 atcata 330  Q
    ||||||    
T  12193521 atcata 12193526  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 15418526 - 15418587
Alignment:
Q  80 ccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatct 141  Q
    ||||||||||| || ||||| ||||| ||||| ||||||||||||||||| |||||||||||    
T  15418526 ccgtcaaagaagactgtgttatgatttgcatatcgatccgagggatcaatcccttcaaatct 15418587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 15418073 - 15418138
Alignment:
Q  16 cctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttcc 81  Q
    |||||||||||| |||||||| ||||| | ||||||||| |||||||| |  |||||||| |||||    
T  15418073 cctaaacatgcaaccggttccgacatacattggaccttgtagaccatccaatgctctcatatttcc 15418138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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