View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_16 (Length: 311)
Name: NF19717_low_16
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_16 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 12654232 - 12654130
Alignment:
| Q |
205 |
aagaacaagtttaaagctgctaaccagacatttgaacttggcataaataggtattgtggtttcttatcttatctcttgggccttgtaatgaaattcatat |
304 |
Q |
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| T |
12654232 |
aagaacaagtttaaagctgctaaccagacatttgaacttggcataaataggtactgtggtttcttatcttatatcttggaccttgtaatgaaattcatat |
12654133 |
T |
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| Q |
305 |
att |
307 |
Q |
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||| |
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| T |
12654132 |
att |
12654130 |
T |
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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 46833015 - 46832931
Alignment:
| Q |
110 |
taacacatcaacgtgccacatcatacactttgcacaatcagctatcttgaggatgtaaaccaattcatctttaaattataagggg |
194 |
Q |
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| T |
46833015 |
taacacatcagcgtgccacatcatacactttgcacagtcagctaccttgagggtgtaaaccaattaatttttaaattataagggg |
46832931 |
T |
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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 20673724 - 20673630
Alignment:
| Q |
110 |
taacacatcaacgtgccacatcatacactttgcacaatcagctatcttgaggatgtaaaccaattcatctttaaattataagggggaatctccaa |
204 |
Q |
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| T |
20673724 |
taacacatcagcgtgccacatcatacactttgaacagtcagctaccttgagggtgtaaagcaaagaatctttaaattacaggggggaatctccaa |
20673630 |
T |
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Target: scaffold0049 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 549 - 454
Alignment:
| Q |
110 |
taacacatcaacgtgccacatcatacactttgcacaatcagctatcttga-ggatgtaaaccaattcatctttaaattataagggggaatctccaa |
204 |
Q |
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| T |
549 |
taacacatcaacgtgccacatcatacattttgcacagtcagctatcgtgaggggtataaaccaaagaatcttttaatttgaagggggaatctccaa |
454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 42277387 - 42277304
Alignment:
| Q |
114 |
acatcaacgtgccacatcatacactttgcacaatcagctatcttga-ggatgtaaaccaattcatctttaaattataaggggga |
196 |
Q |
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| T |
42277387 |
acatcagcgtgccacatcatacactatgcacagtcagctaccttgaggggtgtaaaccaaagaatctttaaattacaaggggga |
42277304 |
T |
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