View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_17 (Length: 310)
Name: NF19717_low_17
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 42684005 - 42684290
Alignment:
| Q |
18 |
ttaatgtatttttcaggagtatccaaatccagctaagaattatgtggcttgttccaagaaaaggcgttcaagtttgaggtatatcaactactttccaata |
117 |
Q |
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| T |
42684005 |
ttaatgtatttttcaggagtatccaaatccagctaagaattatgtggcttgttccaagaaaaggcgttcaagtttaaggtatatcaactactttccaata |
42684104 |
T |
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| Q |
118 |
tttaatccttccattttctccttttcatcttataatgcttcagaatgaacacaatcacacccctttttgaaggagttatgaataatttagtgctctcaaa |
217 |
Q |
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| T |
42684105 |
tttaatccttccattttctccttttcatcttataatgcttcagaatgaacacaatcacacccctttttgaaggagttatgaataatttagtgctctcaaa |
42684204 |
T |
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| Q |
218 |
tagctgatatagaggtgctatggtgttgtattgtagcagagttttaataaactgctaatgttttgtgatgcacaatttagtataat |
303 |
Q |
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| T |
42684205 |
tagctgatatagaggtgctatagtgttgtattgtagcagagttttaataaactgctaatgttttgtgatgcacaatttagtataat |
42684290 |
T |
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