View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_20 (Length: 295)
Name: NF19717_low_20
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 43667008 - 43666735
Alignment:
| Q |
1 |
atgtgcacacttaatatcattaaaaacctcctgatagaaaatttacaatcacccttgaattcaccaattcataaaacctttcattgaattgcattgcatt |
100 |
Q |
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| T |
43667008 |
atgtgcacacttaatatcattaaaaacctccagatagaaaatttacaatcacccttgaattcaccaattcataaaacctttcattgaattgcattgcatt |
43666909 |
T |
|
| Q |
101 |
attactactactagtctatccttatccatctgttttcaattgccaatcagttattcttccaaatcatccctttttcaatcatcctcaaattgaagtgcta |
200 |
Q |
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| T |
43666908 |
a---ctactactagtctatccttatccatctgttttcaattgccaatcagctattcttccaaatcatccctttttcaatcatcctcaaattgaagtgcta |
43666812 |
T |
|
| Q |
201 |
gtaatagtctcgagtttctacccttatcctcaagaaacctttgcttgcatgaagtgcaagtgcaagaatctcccagt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43666811 |
gtaatagtctcgagtttctacccttatcctcaagaaacctttgcttgcatgaagtgcaagtgcaagaatctcccagt |
43666735 |
T |
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