View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_24 (Length: 275)
Name: NF19717_low_24
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 2479584 - 2479767
Alignment:
| Q |
28 |
atatgacatataatacataataatccttaattttttatacaattaagaagttaagtttcagaaaaacttttatttactaatatacttttttgaggggcat |
127 |
Q |
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| T |
2479584 |
atatgacatataatacataataatccttaattttttatacaattaagaagttaagtttcagaaaaacttttatttactaatatacttttttgaggggcat |
2479683 |
T |
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| Q |
128 |
taatagtaatactagatagtggaatgtaggaaatctcactacattaattattaaccggtatttttaatcatccaatatttctctttt |
214 |
Q |
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| T |
2479684 |
taatagtaatactagatcat---atgtaggaaatcgcactacattaattatcaaccggtatctttaatcatccaatatttttctttt |
2479767 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 2479869 - 2479925
Alignment:
| Q |
217 |
cgattgacaaaaatgttttgaatgattaaagattcatccggcgaataaggctagatttc |
275 |
Q |
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| T |
2479869 |
cgattgacaaaaatgtt--ggatgattaaagatttatccggcgaataagtttagatttc |
2479925 |
T |
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