View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_3 (Length: 574)
Name: NF19717_low_3
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 50784531 - 50785073
Alignment:
| Q |
18 |
attaatagtcaaattgataaccaaaatttgttaaaattatagtacttcctccgttcctatatctaggcaccattttattagagaaa----gtgcatatat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||| |
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| T |
50784531 |
attaatagtcaaattgataaccaaaatttgttaaaattatagtacttcctccaatcctatatctaggcaccattttattatagaaaaatggtgcttatat |
50784630 |
T |
|
| Q |
114 |
acaaggacggagggactagataacaactttttcataaaccacggtaaatggtaattcattgtgtgtcgaatttatgtcaattcaaatttgccctaaattc |
213 |
Q |
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| | |||| ||||| ||||| |||||||||| ||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
50784631 |
atagagacgaagggagtagatgacaacttttttctaaaccacgataaatattaattcattgtgtgtcaaatttatgtcaattcaaatttaccctaaattc |
50784730 |
T |
|
| Q |
214 |
ctacttgaattttttaatatttgtnnnnnnnnnnnnnnnnnnnngacttatacaattagcaaaagtgcattagatccaacaaaacacacatatcaagaat |
313 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50784731 |
ctacttgaattttttaatatttgtaaaaataataaaaaa-----gacttatacaattaacaaaagtgcattagatccaacaaaacacacatatcaagaat |
50784825 |
T |
|
| Q |
314 |
gtagtaagcccccactaatgacaatataatcatcacatgatcaaatagtataatatatnnnnnnntaaagtaaaacataacattcttaggttactatagc |
413 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50784826 |
gtggtaagcccccactaatgacaatataatcatcacatgatcaaatagtataatatataaaaa--taaagtaaaacataacattcttaggttactatagc |
50784923 |
T |
|
| Q |
414 |
taattgaatat--gagtgttgactacttgatgtacgtaccttttagtaggaagatgatgctcaatgaaaatttgctcctgctcctgctccaccaccagca |
511 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50784924 |
taattgaatatatgagtgttgactatttgatgtacgtaccttttagtaggaagatgatgctcaatgaaaatttgctcctgctcctcctccaccaccagca |
50785023 |
T |
|
| Q |
512 |
cctcctcttcctccaccaaatgattgtgcagcattgatattgtttctctg |
561 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50785024 |
cctcctcttcctccaccaaatgattgtgcagcattgatattatttctctg |
50785073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 11248643 - 11248683
Alignment:
| Q |
60 |
tacttcctccgttcctatatctaggcaccattttattagag |
100 |
Q |
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|||||||||||| |||||||||| |||| |||||||||||| |
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| T |
11248643 |
tacttcctccgtccctatatctaagcactattttattagag |
11248683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 19989154 - 19989114
Alignment:
| Q |
60 |
tacttcctccgttcctatatctaggcaccattttattagag |
100 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||||||||| |
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| T |
19989154 |
tacttcctccgtccctatatctaagcaccattttattagag |
19989114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 42576992 - 42576952
Alignment:
| Q |
60 |
tacttcctccgttcctatatctaggcaccattttattagag |
100 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||| |
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| T |
42576992 |
tactccctccgttcctatatctaagcaccattttattagag |
42576952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 28601930 - 28601971
Alignment:
| Q |
60 |
tacttcctccgttcctatatctaggcaccattttattagaga |
101 |
Q |
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|||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
28601930 |
tacttcctccgttcttatatctaagcacccttttattagaga |
28601971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 36430420 - 36430464
Alignment:
| Q |
56 |
atagtacttcctccgttcctatatctaggcaccattttattagag |
100 |
Q |
| |
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|||||||||||||||| ||||||| || ||||| ||||||||||| |
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| T |
36430420 |
atagtacttcctccgtccctatatttaagcacccttttattagag |
36430464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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