View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_35 (Length: 238)
Name: NF19717_low_35
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 2930432 - 2930632
Alignment:
| Q |
12 |
aagatcccttcagctgtctgaaacatttgagaaatgagataacatgtttttggctaattgaagtttccaatgcctttcgttctaatagacttgcaaactt |
111 |
Q |
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|||| |||| |||||| ||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
2930432 |
aagacccctccagctgcctgcaacattttagaaatgagataacatgtttttggttaattgaagtttccaatgcctttcgttcaaagagacttgaaaactt |
2930531 |
T |
|
| Q |
112 |
ttttatagcatttctaaaatcaaccaccaccccgatttgcctcagttcatctttgtaagagaaaatcttctccccataaaatttatgatcaataacagga |
211 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
2930532 |
ttttatagcatttccataatcaaccaccaccccgatttgcctcagttcgtctttgtaagagaaaatcttcgccccataaaagttatgatcaataacagga |
2930631 |
T |
|
| Q |
212 |
a |
212 |
Q |
| |
|
| |
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| T |
2930632 |
a |
2930632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 3012334 - 3012129
Alignment:
| Q |
16 |
tcccttcagctgtctgaaacatttgagaaatgagataacatgtttttggctaattgaagtttccaatgcctttcgttctaatagacttgcaaactttttt |
115 |
Q |
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||||| |||| | ||| |||| ||||||||||| || ||||||| |||| ||||||||| ||| |||||||| |||| || ||||| ||||| ||||| |
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| T |
3012334 |
tccctccagcagcctgcaacaattgagaaatgacatgacatgttgttggttaattgaagcttctgatgccttttgttcaaacagactagcaaattttttg |
3012235 |
T |
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| Q |
116 |
atagcatttctaaaatcaaccaccaccccgatttgcctcagttcatctttgtaagagaaaatcttctccccataaaatttatgatcaataacaggaatac |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| | || |
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| T |
3012234 |
atagcatttccaaaatcaaccaccaccccgatttgcctcagttcatctttaaaagagaaaatcttctgcccgtaaaatttatgatcaataacagggagac |
3012135 |
T |
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| Q |
216 |
cattga |
221 |
Q |
| |
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|||||| |
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| T |
3012134 |
cattga |
3012129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 2947107 - 2947288
Alignment:
| Q |
40 |
gagaaatgagataacatgtttttggctaattgaagtttccaatgcctttcgttctaatagacttgcaaacttttttatagcatttctaaaatcaaccacc |
139 |
Q |
| |
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||||||||||||||||||| || || ||||||| ||||| |||||||| ||| |||||||| ||||| | ||| |||| | |||||||||| | |
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| T |
2947107 |
gagaaatgagataacatgtgttgggttaattgaggtttctgatgccttttgtttgaatagactagcaaaaatatttgcggcatccttgaaatcaaccagc |
2947206 |
T |
|
| Q |
140 |
accccgatttgcctcagttcatctttgtaagagaaaatcttctccccataaaatttatgatcaataacaggaataccattga |
221 |
Q |
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| T |
2947207 |
acccctatttgctttaattcatctttgtaactgaaaatcttctctccataaaatttatggtcaataataggaataccattga |
2947288 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 2921146 - 2921254
Alignment:
| Q |
104 |
gcaaacttttttatagcatttctaaaatcaaccaccaccccgatttgcctcagttcatctttgtaagagaaaatcttctccccataaaatttatgatcaa |
203 |
Q |
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||||| ||||| ||||||| || ||||||||||||| | || |||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||| |
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| T |
2921146 |
gcaaattttttgatagcatctccaaaatcaaccaccgcacctattttcctcagttcatctttgtaatcgaaaatcttctctccataaaatttatggtcaa |
2921245 |
T |
|
| Q |
204 |
taacaggaa |
212 |
Q |
| |
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| ||||||| |
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| T |
2921246 |
tcacaggaa |
2921254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 37796040 - 37796136
Alignment:
| Q |
116 |
atagcatttctaaaatcaaccaccaccccgatttgcctcagttcatctttgtaagagaaaatcttctccccataaaatttatgatcaataacaggaa |
212 |
Q |
| |
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||||||| || ||||||||| || || ||||||| ||||||||| ||||||||||||||| || || ||||| |||||||||||||| ||||||| |
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| T |
37796040 |
atagcatctccaaaatcaacaactacaccgatttttttcagttcatttttgtaagagaaaatattatctccatagaatttatgatcaatcacaggaa |
37796136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 1506622 - 1506444
Alignment:
| Q |
40 |
gagaaatgagataacatgtttttggctaattgaagtttccaatgcctttcgttctaatagacttgcaaacttttttatagcatttctaaaatcaaccacc |
139 |
Q |
| |
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|||||||||||| ||||||| | | |||||||| |||||||||||||| |||| ||||| ||| ||| ||||| || |||| |||||||||||| | |
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| T |
1506622 |
gagaaatgagatgacatgttgtccgttaattgaattttccaatgccttttgttcaaatagcctttcaatttttttgatggcatccttaaaatcaaccagc |
1506523 |
T |
|
| Q |
140 |
accccgatttgcctcagttcatctttgtaagagaaaatcttctccccataaaatttatgatcaataacaggaataccat |
218 |
Q |
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||||| | |||| ||| ||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| ||||| |
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| T |
1506522 |
acccctacttgcatcaattcatctttgtaactgaaaattttctccccataaaattcatgatcaataacaggaagaccat |
1506444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 28025023 - 28025140
Alignment:
| Q |
104 |
gcaaacttttttatagcatttctaaaatcaaccaccaccccgatttgcctcagttcatctttgtaagagaaaatcttctccccataaaatttatgatcaa |
203 |
Q |
| |
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||||| ||||||||||||| | ||||||||||||||| ||||||||| ||||||||| ||||||||||||||| || || ||||| ||||||||||||| |
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| T |
28025023 |
gcaaatttttttatagcatcttcaaaatcaaccaccacaccgatttgcttcagttcatttttgtaagagaaaatattatctccatagaatttatgatcaa |
28025122 |
T |
|
| Q |
204 |
taacaggaataccattga |
221 |
Q |
| |
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| ||||||| ||||||| |
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|
| T |
28025123 |
tcacaggaaggccattga |
28025140 |
T |
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