View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_37 (Length: 234)
Name: NF19717_low_37
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 38260977 - 38260748
Alignment:
| Q |
1 |
taggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccccaacatcagcaactgaaatatta |
100 |
Q |
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| T |
38260977 |
taggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccc-aacatcagcaactgaaatatta |
38260879 |
T |
|
| Q |
101 |
attgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260878 |
attgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgt |
38260779 |
T |
|
| Q |
201 |
tgttgttcttgttgttattgatgatgatgtc |
231 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
38260778 |
tgttattcttgttgttattgatgatgatgtc |
38260748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 38244677 - 38244467
Alignment:
| Q |
1 |
taggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccccaacatcagcaactgaaatatta |
100 |
Q |
| |
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||||||||| ||| | ||||||| ||||||||||| |||||||||||||| || |||| |||||||||| ||||| |||||||| ||| | | ||| |
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| T |
38244677 |
taggctgtgaattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatccctaacatcagtaacaaataaattg |
38244578 |
T |
|
| Q |
101 |
attgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgt |
200 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||| |||||||| ||| |
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| T |
38244577 |
atagtttgagaaggcagttcttgtagttgtgatgataagcctacatgaagatcaagatgagaagaagtag---tagaagtattcattttcatcatcttgt |
38244481 |
T |
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| Q |
201 |
tgttgttcttgttg |
214 |
Q |
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||||||| |||||| |
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| T |
38244480 |
tgttgttgttgttg |
38244467 |
T |
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