View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_38 (Length: 212)
Name: NF19717_low_38
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 3189523 - 3189338
Alignment:
| Q |
4 |
agaggagaagcaaagggagaataagcagttccaagtccctccacacgttagccattgccttatctttgtttccctccaaacaatattcaccttcaatgaa |
103 |
Q |
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| T |
3189523 |
agaggagaag-aaagggagaataagcagttccaagtccctccacacgttagccattgccttatctttgtttccctccaaacaatattcaccttcaatgaa |
3189425 |
T |
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| Q |
104 |
ttccccaaatgcacaaaataataatgttactaccctcataactagaactagctccatcatcaccaatacaatattctttattaatta |
190 |
Q |
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| T |
3189424 |
ttccccaaatgcacaaaataataatgttactaccctcataactagaactagctccatcaccaccaatacaatattctttattaatta |
3189338 |
T |
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