View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_4 (Length: 523)
Name: NF19717_low_4
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_4 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 13111522 - 13112016
Alignment:
| Q |
17 |
atttcatcctctcatctctcattttaaaggtcctctcacttgaagggaaaagtcacctaaataagattagttcatgaattgaagttgtacttatacgtag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
13111522 |
atttcatcctctcatctctcattttaaaggtcctctcacttgaagggaaaagtcacctaaataagattagttcatgaattgaatctgtaactatacgtag |
13111621 |
T |
|
| Q |
117 |
taattgttgagttgtgatgtaagggaagggaaacatcaaaactggaatagggagaagaaagagaaagaataatctcacgtaaaaagaaaggagagaccac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13111622 |
taattgttgagttgtgatgtaagggaagggaaacatcaaaactggaatagggagaagaaagagaaagaataatctcacgtaaaaggaaaggagagaccac |
13111721 |
T |
|
| Q |
217 |
tattaaatttgaactgttaagattgatcgaaggggttatggtataaacctctcatctctcacaataaaacccctataacttcctcttgtcactatcatat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13111722 |
tattaaatttgaactgttaagattgatcgaaggggttatggtataaacctctcatctctcacaataaaacccctataacttcctcttgtcactgtcatat |
13111821 |
T |
|
| Q |
317 |
atcagccaacaatctctttcataaataattgcatatcgaatgttggtgttagaggacatacatgcaacaacatttccaattgtcctccacccgaaaactg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13111822 |
atcagccaacaatctctttcataaataattgcatatcggatgttggtgttagaggacatacatgcaacaacacttccaattgtcctccacccgaaaactg |
13111921 |
T |
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| Q |
417 |
ataaacaccttgacctactttattactctcccacatgttttctacttccatcttcctccgtaaacttgtcactcctacgctaccacccaccttca |
511 |
Q |
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| T |
13111922 |
ataaacaccttgacctactttattactctcccacatgttttctacttccatcttccttcgtaaaattgtcactccttcgctaccacccacgttca |
13112016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Complemental strand, 150635 - 150152
Alignment:
| Q |
17 |
atttcatcctctcatctctcattttaaaggtcctctcacttgaagggaaaagtcacctaaataagattagttcatgaattgaagttgtacttatacgtag |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
150635 |
atttcatcctctcatctctcattttaaaagtcctctcacttgaagggaaaaatcacctaaataagattagttcatgaattgaatctgtaactatacgtag |
150536 |
T |
|
| Q |
117 |
taattgttgagttgtgatgtaagggaagggaaacatcaaaactggaatagggagaagaaagagaaagaataatctcacgtaaaaagaaaggagagaccac |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
150535 |
taattgttgagttgttctgtaagggaagggaaacatcaaaactagaatagggagaagaaagagaaacaataatctcacgtaaaaagaaaggagagaccac |
150436 |
T |
|
| Q |
217 |
tattaaatttgaactgttaagattgatcgaaggggttatggtataaacctctcatctctcacaataaaacccctataacttcctcttgtcactatcatat |
316 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||| |||||| |
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| T |
150435 |
tattaaatttgaaccgttaagattgatcgaa-gggttatggtttaaccctctcatctctcacaataaaactcctctaacttcctcttgtcactgtcatat |
150337 |
T |
|
| Q |
317 |
atcagccaacaatctctttcataaataattgcatatcgaatgttggtgttagaggacatacatgcaacaacatttccaattgtcctccacccgaaaactg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| ||| |||||||||||||||||| ||||||| |
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| T |
150336 |
atcagccaacaatctctttcataaataattgcatatcggatgttggagttagatgacat----------acacctccaattgtcctccacccaaaaactg |
150247 |
T |
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| Q |
417 |
ataaacaccttgacctactttattactctcccacatgttttctacttccatcttcctccgtaaacttgtcactcctacgctaccacccaccttca |
511 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
150246 |
ataaacaccttgacctactttattactcacccacatgttttctacttccatcttcctccgtaaaattgtcactccttcgctaccacccaccttca |
150152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 166 - 286
Target Start/End: Original strand, 13784818 - 13784937
Alignment:
| Q |
166 |
gggagaagaaagagaaagaataatctcacgtaaaaagaaaggagagaccactattaaatttgaactgttaagattgatcgaaggggttatggtataaacc |
265 |
Q |
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|||||||||||||||||||||||| || ||| |||||||||| |||||| |||||||||| ||||| ||||||| || || ||||||| ||| || |
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| T |
13784818 |
gggagaagaaagagaaagaataattgcatgtactgagaaaggagataccacttaaaaatttgaaccgttaaaattgatccaaagg-ttatggtttaatcc |
13784916 |
T |
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| Q |
266 |
tctcatctctcacaataaaac |
286 |
Q |
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| T |
13784917 |
tctcatctctcacaataaaac |
13784937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 159 - 286
Target Start/End: Complemental strand, 23902900 - 23902774
Alignment:
| Q |
159 |
tggaatagggagaagaaagagaaagaataatctcacgtaaaaagaaaggagagaccactattaaatttgaactgttaagattgatcgaaggggttatggt |
258 |
Q |
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|||||| |||||||||||||||||||||||| || || |||||||||| |||| | |||||||||| ||||| ||||||| || || ||||||| |
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| T |
23902900 |
tggaatggggagaagaaagagaaagaataattgcatatactgagaaaggagataccatttaaaaatttgaaccgttaaaattgatccaaagg-ttatggt |
23902802 |
T |
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| Q |
259 |
ataaacctctcatctctcacaataaaac |
286 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
23902801 |
ttaatcctctcatctctcacaataaaac |
23902774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 13395352 - 13395430
Alignment:
| Q |
166 |
gggagaagaaagagaaagaataatctcacgtaaaaagaaaggagagaccactattaaatttgaactgttaagattgatc |
244 |
Q |
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||||||||||||||||||||||||| || ||| | |||||||||||||||| |||||||||| ||||||||||||| |
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| T |
13395352 |
gggagaagaaagagaaagaataatcccatgtatagagaaaggagagaccacataaaaatttgaaccgttaagattgatc |
13395430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 45059828 - 45059792
Alignment:
| Q |
24 |
cctctcatctctcatttt-aaaggtcctctcacttga |
59 |
Q |
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| T |
45059828 |
cctctcatctctcattttaaaaggtcctctcacttga |
45059792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 56295285 - 56295242
Alignment:
| Q |
17 |
atttcatcctctcatctctcatttt-aaaggtcctctcacttga |
59 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
56295285 |
atttcaccctctcatctctcattttaaaaggtcctctcacttga |
56295242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 56532818 - 56532757
Alignment:
| Q |
180 |
aaagaataatctcacgtaaaaagaaaggagagaccactattaaatttgaactgttaagattg |
241 |
Q |
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||||||||||||| || | | ||||||||||||| ||| | |||||||||| |||||||||| |
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|
| T |
56532818 |
aaagaataatctcgcggatatagaaaggagagactactttaaaatttgaaccgttaagattg |
56532757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 18861934 - 18861898
Alignment:
| Q |
24 |
cctctcatctctcattttaaaggtcctctcacttgaa |
60 |
Q |
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||||||| ||||||||||||| ||||||||||||||| |
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| T |
18861934 |
cctctcacctctcattttaaaagtcctctcacttgaa |
18861898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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