View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19717_low_6 (Length: 453)

Name: NF19717_low_6
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19717_low_6
NF19717_low_6
[»] chr6 (21 HSPs)
chr6 (9-437)||(30578138-30578565)
chr6 (39-205)||(24941633-24941799)
chr6 (9-184)||(30028592-30028767)
chr6 (36-221)||(29876242-29876427)
chr6 (38-205)||(24934100-24934267)
chr6 (39-205)||(21161025-21161191)
chr6 (252-385)||(29950507-29950640)
chr6 (258-385)||(30148783-30148910)
chr6 (258-385)||(30153753-30153880)
chr6 (78-232)||(29954060-29954214)
chr6 (9-205)||(24272317-24272513)
chr6 (38-205)||(24739594-24739761)
chr6 (308-385)||(24933923-24934000)
chr6 (308-385)||(24941456-24941533)
chr6 (301-403)||(30131943-30132045)
chr6 (9-117)||(16702388-16702496)
chr6 (39-202)||(29881871-29882034)
chr6 (39-202)||(29909027-29909190)
chr6 (78-210)||(30134592-30134721)
chr6 (143-220)||(17171795-17171872)
chr6 (39-103)||(29897617-29897681)
[»] chr4 (1 HSPs)
chr4 (39-205)||(44262993-44263159)
[»] scaffold0014 (2 HSPs)
scaffold0014 (9-202)||(136810-137003)
scaffold0014 (9-202)||(139734-139927)
[»] scaffold0308 (1 HSPs)
scaffold0308 (9-117)||(8516-8624)
[»] chr3 (3 HSPs)
chr3 (305-437)||(24225909-24226041)
chr3 (39-205)||(24219635-24219801)
chr3 (9-117)||(16350571-16350679)
[»] chr1 (2 HSPs)
chr1 (25-205)||(10129570-10129750)
chr1 (33-202)||(41315705-41315874)
[»] scaffold0110 (2 HSPs)
scaffold0110 (303-385)||(44530-44612)
scaffold0110 (41-202)||(44271-44432)
[»] scaffold0019 (1 HSPs)
scaffold0019 (11-151)||(126495-126635)
[»] chr7 (1 HSPs)
chr7 (25-169)||(13093894-13094038)
[»] scaffold0429 (1 HSPs)
scaffold0429 (9-162)||(5672-5825)
[»] scaffold0654 (1 HSPs)
scaffold0654 (9-151)||(1590-1732)
[»] scaffold0051 (2 HSPs)
scaffold0051 (9-162)||(43657-43810)
scaffold0051 (9-117)||(50874-50982)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 437
Target Start/End: Original strand, 30578138 - 30578565
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  30578138 aatatattaaaactacaaacatttgggacaatgtttttcaatctcatttcattaaacaaacgaatagcatcttccaattgacccacaatacaaaaaccat 30578237  T
Q  109 atattagagtattatacgcgacaacatcaggaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgcaaag 208  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||    
T  30578238 atattagagtattatacgtgacaacatcaggaaaaattctcttgacaaccatctcacaatataaatcatacgcatcaactacaagtttatctttacaaag 30578337  T
Q  209 acgattaataatcatggagtacataaaccgatctgacttaaccaccaccaacccttcaatctttccaagcaactgtagggcagannnnnnnnctccggat 308  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||         |||||||     
T  30578338 acgattaataatcatggagtacataaactgatctggcttaaccaccaccaacccttcaatctttccaagcaact-tagggcagcttttgtttctccggac 30578436  T
Q  309 ttacataacccgttgatcaacgttccataactaacattatcaagacgaaaccccttagctataacatcgtcatgaaaatgcaatgctttcttaacttcgt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30578437 ttacataacccgttgatcaacgttccataactaacattatcaagacgaaaccccttagctataacatcgtcatgaaaatgcaatgctttcttaacttcgt 30578536  T
Q  409 tattaatacaaagacctttcaaaagtgta 437  Q
    |||||||||||||||||||||||||||||    
T  30578537 tattaatacaaagacctttcaaaagtgta 30578565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 24941799 - 24941633
Alignment:
Q  39 atgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatcag 138  Q
    |||||||||||   ||||| ||| |||||||||| ||| ||||| ||| |||||||||||||||| ||||||||||||||| |||| | ||||||||| |    
T  24941799 atgtttttcaacaacatttgatttaacaaacgaacagcttctttaaattgacccacaatacaaaagccatatattagagtagtataagtgacaacatctg 24941700  T
Q  139 gaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgca 205  Q
    ||||||||||||| |||| ||||||| || | | |||| | |||| || |||||||||||| |||||    
T  24941699 gaaaaattctcttaacaatcatttcagaacataaatcagaggcatgaattacaagtttatccttgca 24941633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 30028767 - 30028592
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || ||||||  |||||||||||||||||  |||||||||||||||| | || ||||||||||||  |||||||||||||||||||||    
T  30028767 aatatattaaaagtataaacatccgggtcaatgtttttcaacatcatttcattaaacaacctaacagcatctttcaactgacccacaatacaaaaaccat 30028668  T
Q  109 atattagagtattatacgcgacaacatcaggaaaaattctcttgacaaccatttcacaatacagatcatacgcatc 184  Q
    |||| |  ||| |||| |  |||||||  ||||||||  ||||  ||||||||||| ||||||  ||||| |||||    
T  30028667 atatcaacgtactataagtaacaacattcggaaaaatcttcttttcaaccatttcagaatacaactcataagcatc 30028592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 29876427 - 29876242
Alignment:
Q  36 tcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacat 135  Q
    |||| ||||| |||| |||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||||| || |  | |||||| |  | |||||    
T  29876427 tcaacgttttccaatttcatatcattaaacaaaccaatagcatctttcaaccgacccacaacacaaaaaccataaatcatcgcattataagtaaaaacat 29876328  T
Q  136 caggaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgcaaagacgattaataatc 221  Q
    | ||| ||| ||||||  |||||||||||  ||||| |||| |||||||| | ||||| |||||||| || | || ||||||||||    
T  29876327 ccggagaaactctcttagcaaccatttcagtatacaaatcaaacgcatcatcaacaagcttatctttacacaaaccattaataatc 29876242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 24934267 - 24934100
Alignment:
Q  38 aatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatca 137  Q
    ||||||||||||   ||||| ||| ||||||| ||  || ||||||||||||||||||||  || | ||||||||||||||| |||| | |||||||||     
T  24934267 aatgtttttcaacaacatttgattgaacaaaccaactgcttctttcaatcgacccacaatcaaacagccatatattagagtagtataagtgacaacatct 24934168  T
Q  138 ggaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgca 205  Q
    |||||||||||||| |||| ||||||| || | | |||| | |||| || |||||||||||| |||||    
T  24934167 ggaaaaattctcttaacaatcatttcagaacataaatcagaggcatgaattacaagtttatccttgca 24934100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 21161025 - 21161191
Alignment:
Q  39 atgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatcag 138  Q
    |||||||||||   ||||||||| ||||||  ||| || | ||||| | |||||||||| ||||| |||||||||| ||||||||| |  || |||| ||    
T  21161025 atgtttttcaacaacatttcatttaacaaatcaattgcttgtttcatttgacccacaatgcaaaagccatatattaaagtattataggtaaccacattag 21161124  T
Q  139 gaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgca 205  Q
    |||| |||||| || ||||||||||| |||| | |||| | ||||||| |||||||||||| |||||    
T  21161125 gaaatattctcatggcaaccatttcagaatataaatcaaaagcatcaattacaagtttatccttgca 21161191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 385
Target Start/End: Original strand, 29950507 - 29950640
Alignment:
Q  252 accaccaacccttcaatctttccaagcaactgtagggcagannnnnnnnctccggatttacataacccgttgatcaacgttccataactaacattatcaa 351  Q
    |||| |||||||| ||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||  | ||||||||||||| || ||    
T  29950507 accaacaaccctttaatcttttcaagcaactgtagggcagcttttgtttctccggatttacataacccgttgatcaagatcccataactaacatgattaa 29950606  T
Q  352 gacgaaaccccttagctataacatcgtcatgaaa 385  Q
    || |||| || || ||||||||||  ||||||||    
T  29950607 gatgaaatccttttgctataacatgatcatgaaa 29950640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 385
Target Start/End: Complemental strand, 30148910 - 30148783
Alignment:
Q  258 aacccttcaatctttccaagcaactgtagggcagannnnnnnnctccggatttacataacccgttgatcaacgttccataactaacattatcaagacgaa 357  Q
    ||||||| ||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||  | ||||||||||||| || |||| |||    
T  30148910 aaccctttaatcttttcaagcaactgtagggcagcttttgtttctccggatttacataacccgttgatcaagatcccataactaacatgattaagatgaa 30148811  T
Q  358 accccttagctataacatcgtcatgaaa 385  Q
    | || || ||||||||||  ||||||||    
T  30148810 atccttttgctataacatgatcatgaaa 30148783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 385
Target Start/End: Complemental strand, 30153880 - 30153753
Alignment:
Q  258 aacccttcaatctttccaagcaactgtagggcagannnnnnnnctccggatttacataacccgttgatcaacgttccataactaacattatcaagacgaa 357  Q
    |||||||||||||||| ||||||||| |||||||         |||||||||||||||||||||||||||| || ||||||||||| |  | ||||  ||    
T  30153880 aacccttcaatctttctaagcaactgcagggcagctcttgtttctccggatttacataacccgttgatcaatgtcccataactaacctcgttaagataaa 30153781  T
Q  358 accccttagctataacatcgtcatgaaa 385  Q
    | ||||| ||||||||||||| ||||||    
T  30153780 atccctttgctataacatcgttatgaaa 30153753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 29954060 - 29954214
Alignment:
Q  78 tctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatcaggaaaaattctcttgacaaccatttcacaatacagatcat 177  Q
    |||||||| || |||||||| ||||| |||||||||| |||  | || | |||||||| |||| ||||| ||||||||| ||||||| |||| | |||||    
T  29954060 tctttcaaccgtcccacaatgcaaaagccatatattaaagtcgtgtaagtgacaacattaggagaaattttcttgacaatcatttcagaatataaatcat 29954159  T
Q  178 acgcatcaactacaagtttatctttgcaaagacgattaataatcatggagtacat 232  Q
    ||||||||  ||| || |||||||| ||||||| || ||| ||  ||||||||||    
T  29954160 acgcatcacttacgagcttatctttacaaagactatcaatgattgtggagtacat 29954214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 24272317 - 24272513
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || | |||| |||||  ||||||| | || |||||| ||| ||||||| ||| ||||||||||||  ||| ||||| ||||||||||    
T  24272317 aatatattaaaagtatacacatcagggttgatgttttccgatgtcattttattgaacaaaccaattgcatctttcaatttaccaacaatgcaaaaaccat 24272416  T
Q  109 atattagagtattatacgcgacaacatcaggaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgca 205  Q
      |||| || |||||| | |  ||||||||| |||||||||||   |||||||||| |||| | |||| | ||||||    ||||||||||||||||    
T  24272417 taattaaagcattataagtgttaacatcagggaaaattctcttagaaaccatttcagaatataaatcaaaagcatcattatcaagtttatctttgca 24272513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 24739594 - 24739761
Alignment:
Q  38 aatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatca 137  Q
    ||||||||||||   ||||| ||| ||||||| ||  || ||||||||||||||||||||  || | ||||| |||| |||||| || | ||  ||||||    
T  24739594 aatgtttttcaacaacatttgattgaacaaaccaactgcttctttcaatcgacccacaatcaaacagccatacattaaagtattgtaagtgatgacatca 24739693  T
Q  138 ggaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgca 205  Q
    ||| |||||||||||| || ||||| | |||| | |||| | ||||||| |||||||||||| |||||    
T  24739694 ggagaaattctcttgagaagcatttgagaatataaatcaaaagcatcaattacaagtttatccttgca 24739761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 24934000 - 24933923
Alignment:
Q  308 tttacataacccgttgatcaacgttccataactaacattatcaagacgaaaccccttagctataacatcgtcatgaaa 385  Q
    ||||||||| || |||||||| || ||||||||||| | ||||||  |||||||||| ||||| ||||||||||||||    
T  24934000 tttacataatccattgatcaaggtcccataactaacctgatcaaggtgaaacccctttgctatgacatcgtcatgaaa 24933923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 24941533 - 24941456
Alignment:
Q  308 tttacataacccgttgatcaacgttccataactaacattatcaagacgaaaccccttagctataacatcgtcatgaaa 385  Q
    ||||||||| || |||||||| || ||||||||||| | || |||| |||||||||| ||||| ||||||||||||||    
T  24941533 tttacataatccattgatcaaggtcccataactaacttgattaagatgaaacccctttgctatgacatcgtcatgaaa 24941456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 403
Target Start/End: Complemental strand, 30132045 - 30131943
Alignment:
Q  301 ctccggatttacataacccgttgatcaacgttccataactaacattatcaagacgaaaccccttagctataacatcgtcatgaaaatgcaatgctttctt 400  Q
    |||| |||||||||||||||||||| |  |||||||||||||||| ||| |    ||| |||||  |||||||||| || ||||| |||||||||||| |    
T  30132045 ctcccgatttacataacccgttgataagggttccataactaacatgatccaatttaaatcccttttctataacatcatcgtgaaagtgcaatgctttcct 30131946  T
Q  401 aac 403  Q
    |||    
T  30131945 aac 30131943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 16702388 - 16702496
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || ||||||| ||||  ||||||||||||  ||||||||  ||||||| ||  || ||||||||| |||| ||||| ||||| | ||    
T  16702388 aatatattaaaagtataaacatttgggttgatgtttttcaataccatttcatggaacaaactaaacgcttctttcaattgaccaacaatgcaaaatcaat 16702487  T
Q  109 atattagag 117  Q
    | |||||||    
T  16702488 agattagag 16702496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 29882034 - 29881871
Alignment:
Q  39 atgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatcag 138  Q
    ||||||| |||| |||||| ||||||||||  ||| ||||||||||||  ||| ||||| ||||| |||   |||| || | |||| | |||||||| ||    
T  29882034 atgttttccaatatcattttattaaacaaatcaattgcatctttcaatttaccaacaatgcaaaatccactaattaaagcactataagtgacaacattag 29881935  T
Q  139 gaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatcttt 202  Q
    || ||||||||||  || |||||||| |||| | |||| | ||||||   ||| ||||||||||    
T  29881934 gagaaattctctttgcagccatttcagaatataaatcaaaagcatcattaacatgtttatcttt 29881871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 29909190 - 29909027
Alignment:
Q  39 atgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatcag 138  Q
    ||||||| |||| |||||| ||||||||||  ||| ||||||||||||  ||| ||||| ||||| |||   |||| || | |||| | |||||||| ||    
T  29909190 atgttttccaatatcattttattaaacaaatcaattgcatctttcaatttaccaacaatgcaaaatccactaattaaagcactataagtgacaacattag 29909091  T
Q  139 gaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatcttt 202  Q
    || ||||||||||  || |||||||| |||| | |||| | ||||||   ||| ||||||||||    
T  29909090 gagaaattctctttgcagccatttcagaatataaatcaaaagcatcattaacatgtttatcttt 29909027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 30134721 - 30134592
Alignment:
Q  78 tctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatcaggaaaaattctcttgacaaccatttcacaatacagatcat 177  Q
    ||||| ||| ||||| |||| ||||| || | || |||||||||||| |  |||||||||||| ||||| ||||   || ||||||| |||| | |||||    
T  30134721 tcttttaattgacccgcaatgcaaaatccgtgtactagagtattataggttacaacatcaggagaaattttctt---aatcatttcagaatataaatcat 30134625  T
Q  178 acgcatcaactacaagtttatctttgcaaagac 210  Q
    | ||||||| ||| || |||||||| |||||||    
T  30134624 aagcatcaattacgagcttatctttacaaagac 30134592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 17171872 - 17171795
Alignment:
Q  143 aattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgcaaagacgattaataat 220  Q
    ||||||||||| |||||| ||| |||| | ||||  | ||||| |||||||||| ||||||||||||| || ||||||    
T  17171872 aattctcttgagaaccatctcaaaatataaatcaatcacatcatctacaagtttctctttgcaaagacaatcaataat 17171795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 29897681 - 29897617
Alignment:
Q  39 atgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaa 103  Q
    |||||||||||| |||||| ||| ||||||| ||| ||||||||||||  ||| ||||| |||||    
T  29897681 atgtttttcaatatcattttattgaacaaaccaattgcatctttcaatttaccaacaatgcaaaa 29897617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 44262993 - 44263159
Alignment:
Q  39 atgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatcag 138  Q
    |||||||||||   ||||| ||| ||||||| ||  || ||||| ||| |||||||||||||||| |||| |||||||||| |||| | ||||||||| |    
T  44262993 atgtttttcaacaacatttgatttaacaaaccaactgcttctttaaattgacccacaatacaaaagccatgtattagagtagtataagtgacaacatccg 44263092  T
Q  139 gaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgca 205  Q
    |||||||||||||||||| ||||||| || | | | || | ||||||| || |||||||| ||||||    
T  44263093 gaaaaattctcttgacaatcatttcagaacataaagcagaggcatcaattataagtttatttttgca 44263159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 137003 - 136810
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || || |||| ||||  ||||||||||||  ||||| ||  ||||||| ||  || |||||||||||||| ||||| ||||| ||||    
T  137003 aatatattaaaagtataatcatttgggttgatgtttttcaataccatttgatggaacaaaccaaatgcttctttcaatcgaccaacaatgcaaaatccat 136904  T
Q  109 atattagagtattatacgcgacaacatcaggaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatcttt 202  Q
    | ||||||| |||  | | ||||||||||||| ||||| ||||  ||| ||||||| |||| |  ||||| ||||||| |||||||||||||||    
T  136903 agattagagaattgaaagtgacaacatcaggagaaattgtctttgcaatcatttcagaatataactcataagcatcaattacaagtttatcttt 136810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 139927 - 139734
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || ||||||   |||  ||||||||||||  ||||||||  ||||||||||  |||||||| ||| |||| ||||||||||| ||||    
T  139927 aatatattaaaagtataaacatctcggttgatgtttttcaataccatttcatggaacaaacgaaatgcatctttgaattgaccaacaatacaaaatccat 139828  T
Q  109 atattagagtattatacgcgacaacatcaggaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatcttt 202  Q
    | ||||||| | |  | | ||||||||||||| ||||| ||||  ||| ||||||| |||| |   |||| ||||||| ||| | |||||||||    
T  139827 agattagagaactgaaagtgacaacatcaggataaattttctttgcaatcatttcagaatataacccataggcatcaagtaccaatttatcttt 139734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 8624 - 8516
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || ||||||| ||||  ||||||||||||  ||||||||| ||||||||||  |||||||| ||| |||| ||||||||||| ||||    
T  8624 aatatattaaaagtataaacatttgggttgatgtttttcaataccatttcattgaacaaacgaaatgcatctttgaattgaccaacaatacaaaatccat 8525  T
Q  109 atattagag 117  Q
    | |||||||    
T  8524 agattagag 8516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 437
Target Start/End: Complemental strand, 24226041 - 24225909
Alignment:
Q  305 ggatttacataacccgttgatcaacgttccataactaacattatcaagacgaaaccccttagctataacatcgtcatgaaaatgcaatgctttcttaact 404  Q
    |||||||||||||||||||||||| || ||||||||||||| ||  ||| |||| ||||| ||||||||||  |||||||| |  |  |||||| ||||     
T  24226041 ggatttacataacccgttgatcaatgtcccataactaacatgattcagatgaaatccctttgctataacatgatcatgaaagtaaagagctttcctaacc 24225942  T
Q  405 tcgttattaatacaaagacctttcaaaagtgta 437  Q
    |||  ||||| |||||||||||||| |||||||    
T  24225941 tcgccattaagacaaagacctttcataagtgta 24225909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 24219635 - 24219801
Alignment:
Q  39 atgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatcag 138  Q
    ||||||| |||| |||||| ||  ||||||| ||| |||||||||||| |||||| ||| || |||||| | |||| ||||||||| | |||||||  ||    
T  24219635 atgttttccaatatcattttatgtaacaaaccaattgcatctttcaattgacccataatgcataaaccacaaattaaagtattataagtgacaacagtag 24219734  T
Q  139 gaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgca 205  Q
    || ||||||||||  ||||||||||| |||| | |||| | |||||    |||||||||||||||||    
T  24219735 gacaaattctcttagcaaccatttcagaatagaaatcaaaagcatcgttaacaagtttatctttgca 24219801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 16350679 - 16350571
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || || |||  ||||  |||||||||| |  ||||||||||||||||||||  |||||||| |||  ||| ||||||||||| ||||    
T  16350679 aatatattaaaagtataagcatctgggttgatgtttttcattaccatttcattaaacaaacgaaatgcatctttgaatttaccaacaatacaaaatccat 16350580  T
Q  109 atattagag 117  Q
    | |||||||    
T  16350579 agattagag 16350571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 10129750 - 10129570
Alignment:
Q  25 aaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattata 124  Q
    ||||||| |||| |||||||| |||| |||||| ||  ||||||| ||| |||||||||||| |||||||||  ||||| |||   |||| | |||||||    
T  10129750 aaacatttgggttaatgttttccaatatcattttatgcaacaaaccaattgcatctttcaattgacccacaacgcaaaagccactaattaaattattata 10129651  T
Q  125 cgcgacaacatcaggaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatctttgca 205  Q
     | ||||||||||||||||||||||||  | | ||||||| |||| | || | | ||||||   |||||||||||||||||    
T  10129650 agtgacaacatcaggaaaaattctcttagcgatcatttcagaatataaattaaaagcatcattaacaagtttatctttgca 10129570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 41315874 - 41315705
Alignment:
Q  33 gggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaa 132  Q
    |||| |||||||||||||  ||||| | | ||||||| ||  |||||||||||| |||| | ||| ||||| ||||||||||||| |||  | | | |||    
T  41315874 gggttaatgtttttcaataccatttgactgaacaaaccaaatgcatctttcaattgaccaataatgcaaaatccatatattagagaattgaaagtggcaa 41315775  T
Q  133 catcaggaaaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatcttt 202  Q
    |||||||| ||||| |||   ||| ||||||| |||| |  ||||| ||||||  |||||| ||||||||    
T  41315774 catcaggagaaattttctctgcaatcatttcagaatataactcataagcatcatttacaagcttatcttt 41315705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 44530 - 44612
Alignment:
Q  303 ccggatttacataacccgttgatcaacgttccataactaacattatcaagacgaaaccccttagctataacatcgtcatgaaa 385  Q
    |||||||||||||| ||||||||||| || ||||||||||| | || ||||  ||| ||||| ||||||||||||| ||||||    
T  44530 ccggatttacataatccgttgatcaaggtcccataactaacctcattaagataaaatccctttgctataacatcgttatgaaa 44612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 44271 - 44432
Alignment:
Q  41 gtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattatacgcgacaacatcagga 140  Q
    |||||||||  |||||  ||| ||||||| ||  || ||||||| | |||||| |||| |||||||||||||||||||||| || | ||   ||||||||    
T  44271 gtttttcaacgtcattcgatttaacaaaccaactgcttctttcatttgacccaaaatagaaaaaccatatattagagtattgtaagtgatggcatcagga 44370  T
Q  141 aaaattctcttgacaaccatttcacaatacagatcatacgcatcaactacaagtttatcttt 202  Q
     ||||| |||| |||| ||||||| |||| | ||||||| |||||   ||||| ||||||||    
T  44371 taaattttcttaacaatcatttcagaatataaatcatacccatcactaacaagcttatcttt 44432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 126495 - 126635
Alignment:
Q  11 tatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatat 110  Q
    |||||||||| || ||||||  ||||  ||||||||||||   |||||||  ||||||||||  |||||||| ||| |||| ||||||||||| |||||     
T  126495 tatattaaaagtataaacatctgggttgatgtttttcaatactatttcatggaacaaacgaaacgcatctttgaattgaccaacaatacaaaatccataa 126594  T
Q  111 attagagtattatacgcgacaacatcaggaaaaattctctt 151  Q
    ||||||| |||  | | ||||||||  ||| ||||||||||    
T  126595 attagagaattgaaagtgacaacattgggagaaattctctt 126635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 13093894 - 13094038
Alignment:
Q  25 aaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccatatattagagtattata 124  Q
    |||||| |||||  |||||||||||   ||||||  | ||||||| ||| || | ||||||| ||||| |||||||||| ||||||||||| ||| |||     
T  13093894 aaacatcagggttgatgtttttcaaaaccatttcggtgaacaaactaatggcttgtttcaattgacccgcaatacaaaagccatatattagtgtagtatg 13093993  T
Q  125 cgcgacaacatcaggaaaaattctcttgacaaccatttcacaata 169  Q
     | |||||||| | | |||||  ||||||||||||||||| ||||    
T  13093994 agtgacaacattatgtaaaatattcttgacaaccatttcagaata 13094038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 5825 - 5672
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || | ||||| ||||  ||||||||||||  ||||||||  ||||||| ||  || ||| ||||| |||| ||||| ||||| ||||    
T  5825 aatatattaaaagtatacacatttgggttgatgtttttcaataccatttcatggaacaaaccaaatgcttctatcaattgaccaacaatgcaaaatccat 5726  T
Q  109 atattagagtattatacgcgacaacatcaggaaaaattctcttgacaaccattt 162  Q
    | |||| || |||  | | ||||||||||||| ||||| |||| |||| |||||    
T  5725 agattaaagaattgaaagtgacaacatcaggagaaattttctttacaatcattt 5672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 1590 - 1732
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || | |||| |||||  ||||||||||||  |||||| | |||||||| ||  || ||||||| | |||| ||||| ||||| ||||    
T  1590 aatatattaaaagtatacacatcagggttgatgtttttcaataccatttcgtgaaacaaaccaaatgcttctttcagttgaccaacaatgcaaaatccat 1689  T
Q  109 atattagagtattatacgcgacaacatcaggaaaaattctctt 151  Q
    | || |||| | || | | ||||||||| ||| ||||||||||    
T  1690 aaatcagagcactaaaagtgacaacatcgggagaaattctctt 1732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 43657 - 43810
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || | ||||| ||||  ||||||||||||  ||||||||  ||||||| ||  || ||| ||||| |||| ||||  ||||| ||||    
T  43657 aatatattaaaagtatacacatttgggttgatgtttttcaataccatttcatggaacaaaccaaatgcttctatcaattgaccaacaaagcaaaatccat 43756  T
Q  109 atattagagtattatacgcgacaacatcaggaaaaattctcttgacaaccattt 162  Q
    | |||| || |||  | | ||||||||||||| ||||| |||| |||| |||||    
T  43757 agattaaagaattgaaagtgacaacatcaggagaaattttctttacaatcattt 43810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 50874 - 50982
Alignment:
Q  9 aatatattaaaactacaaacattagggtcaatgtttttcaatctcatttcattaaacaaacgaatagcatctttcaatcgacccacaatacaaaaaccat 108  Q
    |||||||||||| || ||||||| ||||  |||||| |||||  ||||||||  ||||||| ||  || | ||||| | |||| ||||| ||||| ||||    
T  50874 aatatattaaaagtataaacatttgggtggatgtttgtcaatagcatttcatggaacaaacaaaatgcttttttcagttgaccaacaatgcaaaatccat 50973  T
Q  109 atattagag 117  Q
    |||||||||    
T  50974 atattagag 50982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University