View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_8 (Length: 417)
Name: NF19717_low_8
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 18191401 - 18191578
Alignment:
| Q |
19 |
gtgtttccattatcaggaggtttctgtcttttacaaagtataaatcatctgaatgataaaatattggcatgattggttgaatatattgtctagaaatttc |
118 |
Q |
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| T |
18191401 |
gtgtttccattatcaggaggtttctgtcttttacaaagtataaatcatctgaatgataaaatattggcatgattggttgaatatattgtctagaaatttc |
18191500 |
T |
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| Q |
119 |
tcttaatcttccttaaacaactccataaataaatggatgatcttttatccatttggatttgaaactaccaaattgttt |
196 |
Q |
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| T |
18191501 |
tcttaatcttccttaaacaactccataaataaatggatgatcttttatcaatttggatttgaaactaccatattgttt |
18191578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 42277228 - 42277530
Alignment:
| Q |
19 |
gtgtttccattatcaggaggt-ttctgtcttttacaaagtataaatcatctgaatgataaaatattggcatgattggttgaatatattgtctagaaattt |
117 |
Q |
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| T |
42277228 |
gtgtctccgttatcaggaggtattccgtctttttcctagcagaaatcatctgaattataaaatactggcatcattggttgaatatattgtctaaattttt |
42277327 |
T |
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| Q |
118 |
ctc--ttaatcttccttaaacaactccataaataaatggatgatcttttatccatttggatttgaaactaccaaattgtttagattccatgaagtgcaaa |
215 |
Q |
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| T |
42277328 |
ctctcttaatcttccttaaataactccataaataaatggatgatcttttgtcaatttgggtttgatatcaccaaattgtttagattgcatgaagtgcgaa |
42277427 |
T |
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| Q |
216 |
ttgttttccttgaaattatcatccaggtttatcctcaaatatgacttaagagactagttattatttcccttctactcactttgatgagatcctaagagca |
315 |
Q |
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| T |
42277428 |
tctttttccttgaaattatcatccagatttatccccaactacgctttaagagactagttattgtttccattctacttaatttgatgtgaacctaagagca |
42277527 |
T |
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| Q |
316 |
cta |
318 |
Q |
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||| |
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| T |
42277528 |
cta |
42277530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 215 - 403
Target Start/End: Original strand, 18191572 - 18191760
Alignment:
| Q |
215 |
attgttttccttgaaattatcatccaggtttatcctcaa--atatgacttaagagactagttattatttcccttctactcactttgatgagatcctaaga |
312 |
Q |
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| T |
18191572 |
attgttttccttgaaattatcattcatgtttatcctcaactatatgacataagagactagttatt-tttcccttctactcactttgatgagatcctaaga |
18191670 |
T |
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| Q |
313 |
gcactatagnnnnnnnnnnncttctatatttatttcttagaaaaactccacaatctgttatatatgtaacatttctacaactcccctttgc |
403 |
Q |
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| T |
18191671 |
gcactatag-ttttttttttcttctaaatttatttcttagaaaaactccacaatctgttatatatgtaacatttctacaactcccctttgc |
18191760 |
T |
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