View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19717_low_9 (Length: 410)
Name: NF19717_low_9
Description: NF19717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19717_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 26795496 - 26795119
Alignment:
| Q |
13 |
aatatcaacatatcataaaaagtagatatattaattaagcctattttgatcttttagctcaaaccttcaatctgattttaaaattagtcttttttctctt |
112 |
Q |
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| T |
26795496 |
aatatcaacatatcataaaaagtagatatattaattaagcctattttgatcttttagctcaaaccttcaatctgattttaaaattagtcttttttctctt |
26795397 |
T |
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| Q |
113 |
tctacaattccctccctccggaaaaataataagtacaagagatactcatcctaatatgtctaatatttcaggttctgatgagttcaaatttccggctgtt |
212 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26795396 |
tctac--ttccctccctccggaaaaataataagtacaagagatactcatcctaatatgtctaatatttcaggttctgatgagttcaaatttccggctgtt |
26795299 |
T |
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| Q |
213 |
gcgagttccatgaccacattgacatgtgttcaggtgcactctatggacgaaacggtcaatgaaacagcctatcaaacaagtgtagaaattggaggacatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26795298 |
acgagttccatgaccacattgacatgtgttcaggtgcgctctatggacgaaacggtcaatgaaacggcctatcaaacaagtgtagaaattggaggacatg |
26795199 |
T |
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| Q |
313 |
tatttagtggtattctttatgatcaaggccctgatgaacaaagcttcaataatatacaccctcttgatcagcaacaaaat |
392 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26795198 |
tatttagtggcattctttatgatcaaggccctgatgaacaaagcttcaataatatacaccctcttgatcagcaacaaaat |
26795119 |
T |
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