View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_high_10 (Length: 456)
Name: NF19718_high_10
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 52 - 290
Target Start/End: Complemental strand, 2404285 - 2404047
Alignment:
| Q |
52 |
accatcttctaatttcttattgttctaacctcccatgttctacaccataaaaattctttcccatgttctaagttccataaccaagatgatcaatgacaac |
151 |
Q |
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| T |
2404285 |
accatcttctaatttcttattgttctaacctcccatgttctacaccataaaaattcttttccatgttctaagttccataaccaagatgatcaatgacaac |
2404186 |
T |
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| Q |
152 |
accccattctttgaactctatctcttaaaattccattgtacaaagcaactctatttgctggcattgcttttgtttctggaatttcatttctgcattcatt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2404185 |
accccattctttgaactctatctcttaaaattccattgtacaaagcaactctatttgctggcattgcttttgtttctggaatttcatttctgcattcatt |
2404086 |
T |
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| Q |
252 |
aattgatactctgtttttcttccccggtttttctctaaa |
290 |
Q |
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| T |
2404085 |
aattgatactctgtttttcttccccggtttttctctaaa |
2404047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 2403954 - 2403903
Alignment:
| Q |
384 |
taataaatatagtgaatgtttcatacaaaatatccaggacaaaacatagata |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2403954 |
taataaatatagtgaatgtttcatacaaaatatccaggacaaaacatagata |
2403903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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