View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_high_11 (Length: 396)
Name: NF19718_high_11
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 3 - 380
Target Start/End: Original strand, 11155877 - 11156256
Alignment:
| Q |
3 |
tgcatttgataatggttgcaatcaaacaaaaatgatcatatagttaaataaggtagcggcgccgtctgtattt-gttttcagtttttgccgcgagttttt |
101 |
Q |
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| T |
11155877 |
tgcatttgataatggttgcaatccaacaaaaatgatcatatagttaattaaggtagcggcgccgtctgtattttgttttcagtttttgccgcgagttttt |
11155976 |
T |
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| Q |
102 |
gtgtgccttgcatttactcgacgtgaataaatttgccatttcnnnnnnn---gttaattaaggtagcttcaaaatctagggttatttttataatgattaa |
198 |
Q |
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| T |
11155977 |
atgcgccttgcatttactcgacgtgaataaattttccgtttcaaaaaaaaaagttaattaaggtagcttcaaaatctagggttatttttataatgattaa |
11156076 |
T |
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| Q |
199 |
atnnnnnnnnnccatttcaagaagttcatcatctatgaaaattaaatactacatcacaaggctaagagtaacacttattttacctatgctgaaataatac |
298 |
Q |
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| T |
11156077 |
ataaaaaaa--ccatttcaagaagttaatcatctatgaaaattaaatactacatcacaaggctaagagtaacacttattttacctatgatgaaataatac |
11156174 |
T |
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| Q |
299 |
aggcacaaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccgaacacttgcaaatcaaaatct |
380 |
Q |
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| T |
11156175 |
aggcacaaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccggacacttgcaaatcaaaatct |
11156256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 11145548 - 11145624
Alignment:
| Q |
304 |
caaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccgaacacttgcaaatcaaaatct |
380 |
Q |
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| T |
11145548 |
caaggtcctgattggaaagttcctttaggaagaagagatggtttaacagcaaaccaatcacttgctaatcaaaatct |
11145624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 11149495 - 11149559
Alignment:
| Q |
316 |
tggacagttcctttaggaagaagggatggtttaactgcaaaccgaacacttgcaaatcaaaatct |
380 |
Q |
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| T |
11149495 |
tggaaagttcctttaggaagaagagatggtttaacagcaaaccaattacttgctaataaaaatct |
11149559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 11137226 - 11137309
Alignment:
| Q |
297 |
acaggcacaaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccgaacacttgcaaatcaaaatct |
380 |
Q |
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| T |
11137226 |
acaggcagatggtcctaattggaaggttcccttaggaagaagggatggtttaaccgccaaccaatcgctcgctaatcaaaatct |
11137309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 35443325 - 35443290
Alignment:
| Q |
108 |
cttgcatttactcgacgtgaataaatttgccatttc |
143 |
Q |
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| T |
35443325 |
cttgcatttactcgacgagaataaatttgccatttc |
35443290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 8503978 - 8503932
Alignment:
| Q |
97 |
tttttgtgtgccttgcatttactcgacgtgaataaatttgccatttc |
143 |
Q |
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| T |
8503978 |
tttttatgcgccttgcatttactcgacgagaataaatttgccatttc |
8503932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 46282702 - 46282748
Alignment:
| Q |
97 |
tttttgtgtgccttgcatttactcgacgtgaataaatttgccatttc |
143 |
Q |
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| T |
46282702 |
tttttatgtgtcttgcatttactcgacgagaataaatttgtcatttc |
46282748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 31034376 - 31034318
Alignment:
| Q |
85 |
ttttgccgcgagtttttgtgtgccttgcatttactcgacgtgaataaatttgccatttc |
143 |
Q |
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| T |
31034376 |
tttttccgcgagtgtttatgcgtcttgcatttactcgacgagaataaatttaccatttc |
31034318 |
T |
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