View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_high_17 (Length: 309)
Name: NF19718_high_17
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 10741493 - 10741208
Alignment:
| Q |
16 |
acaaatgccctaaaagctgtcgacctgtatctggagaaaaatagccttcaattggaggttgaggtagtactctctttcattctttcacgcattctttcta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
10741493 |
acaaatgccctaaaagctgtcgacctgtatctggagaaaaatagccttcaattggaggttgaggtagtactctctttcatcctttcacgcattcttttta |
10741394 |
T |
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| Q |
116 |
aggccctgatccttaatgaacaattttctcaatccct--ctctatattgcagccannnnnnnnnnnnnnnnnncatttcctttaatagatttcgcaacaa |
213 |
Q |
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||||||||||||||||| || |||||||||||||||| |||||||||||| | | |||||||||||||||||||| |||||| |
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| T |
10741393 |
aggccctgatccttaataaataattttctcaatccctctctctatattgcaccta----ttttttttttttttcatttcctttaatagatttcacaacaa |
10741298 |
T |
|
| Q |
214 |
ctccccctcctccactcctacttgccatatctgcagggtagttaaaacttaaattcccatcttaaccttgaattacctcacctttgcttc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
10741297 |
ctccccctcctccactcctacttgccatatctgcagggtagttaaaacttaaattcccatcttaaccttgaattacctcatctttacttc |
10741208 |
T |
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