View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19718_high_2 (Length: 706)

Name: NF19718_high_2
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19718_high_2
NF19718_high_2
[»] chr4 (13 HSPs)
chr4 (410-706)||(23408328-23408624)
chr4 (16-231)||(23407878-23408093)
chr4 (241-375)||(23408192-23408326)
chr4 (625-706)||(23415712-23415793)
chr4 (626-704)||(23453376-23453454)
chr4 (626-706)||(23868926-23869006)
chr4 (626-706)||(24307417-24307497)
chr4 (626-704)||(23886023-23886101)
chr4 (626-704)||(26434220-26434298)
chr4 (626-704)||(26832931-26833009)
chr4 (626-704)||(23402270-23402348)
chr4 (626-704)||(26436000-26436078)
chr4 (626-704)||(34662045-34662123)
[»] chr1 (3 HSPs)
chr1 (637-706)||(33216639-33216708)
chr1 (626-704)||(45576399-45576477)
chr1 (649-701)||(29391665-29391717)
[»] chr7 (2 HSPs)
chr7 (628-706)||(47317476-47317554)
chr7 (649-701)||(40180297-40180349)
[»] chr2 (1 HSPs)
chr2 (664-706)||(14715443-14715485)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-154; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 410 - 706
Target Start/End: Original strand, 23408328 - 23408624
Alignment:
Q  410 aggaggaatccaactatattttatgagaaaatgtattcagtctttgatacccctagatcaatcattcaaaacagagagaaacccaattctacaagcaatt 509  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23408328 aggaggaatccaactatattttatgagaaaatgtattccgtctttgatacccctagatcaatcattcaaaacagagagaaacccaattctacaagcaatt 23408427  T
Q  510 ttcaagtcaaatatcattaactccatttcttacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaaacactaagaaaccaat 609  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23408428 ttcatgtcaaatatcattaactccatttcttacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaaacactaagaaaccaat 23408527  T
Q  610 aaacataaacgaaatgtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtc 706  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23408528 aaacataatcgaaatgtctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtc 23408624  T

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Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 23407878 - 23408093
Alignment:
Q  16 agaagaaccaattccaagaacaaatttactagtttgaacaatgtgttcatatattagcattagctggatatagaatcaaacacacaccatgtatctttcc 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23407878 agaagaaccaataccaagaacaaatttactagtttgaacaatgtgttcatatattagcattagctggatatagaatcaaacacacaccatgtatctttct 23407977  T
Q  116 ttctaagctcacctctgaactttcatgtatatattttgtatcagatgtgtttgtgcttacagacaaaggatataagcttatcaaattctaattctcagtc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23407978 ttctaagctcacctctgaactttcatgtatatattttgtatcagatgtgtttgtgcttaaagacaaaggatataagcttatcaaattctaattctcagtc 23408077  T
Q  216 aaattacaaaataata 231  Q
    ||||||||||||||||    
T  23408078 aaattacaaaataata 23408093  T

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Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 241 - 375
Target Start/End: Original strand, 23408192 - 23408326
Alignment:
Q  241 gtccacttataattaaacatatagcagatatcttctgcagaattacagcaaaaaacatccttaattttgcatctaagccaagatcaaattacagtgtcaa 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  23408192 gtccacttataattaaacatatagcagatatcttctgcacaattacagcaaaaaacatccttaattttgcatctcagccaagatcaaattacagtgtcag 23408291  T
Q  341 taaaattgattaattataaacaatcacaatccaca 375  Q
    ||||||||||||||||||||||||||||| |||||    
T  23408292 taaaattgattaattataaacaatcacaacccaca 23408326  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 625 - 706
Target Start/End: Original strand, 23415712 - 23415793
Alignment:
Q  625 gtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtc 706  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  23415712 gtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtc 23415793  T

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Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 626 - 704
Target Start/End: Original strand, 23453376 - 23453454
Alignment:
Q  626 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 704  Q
    ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23453376 tctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 23453454  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 626 - 706
Target Start/End: Complemental strand, 23869006 - 23868926
Alignment:
Q  626 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtc 706  Q
    ||||||| || || |||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  23869006 tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtc 23868926  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 626 - 706
Target Start/End: Complemental strand, 24307497 - 24307417
Alignment:
Q  626 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtc 706  Q
    ||||||| || || ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  24307497 tctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtc 24307417  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 626 - 704
Target Start/End: Complemental strand, 23886101 - 23886023
Alignment:
Q  626 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 704  Q
    ||||||| || |||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||    
T  23886101 tctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaag 23886023  T

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Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 626 - 704
Target Start/End: Complemental strand, 26434298 - 26434220
Alignment:
Q  626 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 704  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || ||||||||    
T  26434298 tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaag 26434220  T

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Target: chr4; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 626 - 704
Target Start/End: Complemental strand, 26833009 - 26832931
Alignment:
Q  626 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 704  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || ||||||||    
T  26833009 tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaag 26832931  T

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Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 626 - 704
Target Start/End: Complemental strand, 23402348 - 23402270
Alignment:
Q  626 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 704  Q
    ||||||| || |||||||| |||||||| ||||| || || || |||||||||||||||||||||||||||||||||||    
T  23402348 tctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaag 23402270  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 626 - 704
Target Start/End: Complemental strand, 26436078 - 26436000
Alignment:
Q  626 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 704  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || ||||||||    
T  26436078 tctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaag 26436000  T

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Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 626 - 704
Target Start/End: Original strand, 34662045 - 34662123
Alignment:
Q  626 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 704  Q
    ||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| ||||||||||||||    
T  34662045 tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaag 34662123  T

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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 637 - 706
Target Start/End: Complemental strand, 33216708 - 33216639
Alignment:
Q  637 gtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtc 706  Q
    |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||    
T  33216708 gtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtc 33216639  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 626 - 704
Target Start/End: Complemental strand, 45576477 - 45576399
Alignment:
Q  626 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 704  Q
    ||||||||||||| || || |||||||| ||||| || ||||||||| ||||||| ||||||||| | || ||||||||    
T  45576477 tctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag 45576399  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 701
Target Start/End: Complemental strand, 29391717 - 29391665
Alignment:
Q  649 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaac 701  Q
    ||||||||||| ||||| ||||||||||| || ||||||||||| ||||||||    
T  29391717 acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaac 29391665  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 628 - 706
Target Start/End: Complemental strand, 47317554 - 47317476
Alignment:
Q  628 taagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtc 706  Q
    ||||| || |||||||| |||||||| ||||| || ||||||||| |||| |||||||||||||||||||||| |||||    
T  47317554 taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtc 47317476  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 701
Target Start/End: Original strand, 40180297 - 40180349
Alignment:
Q  649 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaac 701  Q
    |||||||| || ||||||||||||||||| || |||||||| |||||||||||    
T  40180297 acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaac 40180349  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 664 - 706
Target Start/End: Complemental strand, 14715485 - 14715443
Alignment:
Q  664 tcagaaacagcatgcttggccaattcaccaggaagaacaagtc 706  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||    
T  14715485 tcagacacaacatgcttggccaattctccaggaagaacaagtc 14715443  T

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