View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_high_20 (Length: 274)
Name: NF19718_high_20
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46578632 - 46578409
Alignment:
| Q |
1 |
atttgggacggagggagtataaaatatgttgtttcccattaaaaatgaaatcgactaa-ggaagactcaagagcagcgacaaccccatcatgaatatcaa |
99 |
Q |
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| T |
46578632 |
atttgggacggatggagtataaaacatgctgtttcccaagaaaaatgaaatcaactaaaggaagactcaagagcagcgacaacctcatcatgaatatcaa |
46578533 |
T |
|
| Q |
100 |
tggagaataaaattaggctatcaagccatttatccaaccacacgttgattgaggtgtcataccaactaccaagtgttattatggatttgggaaatccaag |
199 |
Q |
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| T |
46578532 |
tggagaataaaattaggctatcaagccatttatccaaccacacgttgattgaggtgtcataccaactaccaagtgttattatggatttgggaaatccaag |
46578433 |
T |
|
| Q |
200 |
cttcgaaagttattcaaatagcat |
223 |
Q |
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| T |
46578432 |
cttcgaaagttattcaaatagcat |
46578409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 258
Target Start/End: Complemental strand, 46578258 - 46578227
Alignment:
| Q |
227 |
tataatgagattgaagattgttattcatgatc |
258 |
Q |
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| T |
46578258 |
tataatgagattgaagattgttattcatgatc |
46578227 |
T |
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