View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_high_25 (Length: 249)
Name: NF19718_high_25
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 6769378 - 6769600
Alignment:
| Q |
13 |
aatataactgatggttgttttacctcactcaaatcagagtaacatacacgattcaggtcttgagtttggcaaaatccaacccaaaccgacccacatacac |
112 |
Q |
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| T |
6769378 |
aatataactgatggttattttacctcactcaaaccaaagtaacatacacaattcaggtcttgagtttggcaaaatccaacccaaaccgacccacatacac |
6769477 |
T |
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| Q |
113 |
cccagtcaaaatgatgaagctacaaaactaagcttatgtcaaaattcattgcgattccataaagtcggtgctaaacaaaaagattgttatattgaaagtc |
212 |
Q |
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| T |
6769478 |
cccagtaaaaatgatgaagctacaaaactaagcttatgtcaaaattcattgtgattccataaagtcggtgccaaacaaaaagattgttatattgaaagtc |
6769577 |
T |
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| Q |
213 |
cttaccatggttcatttatatct |
235 |
Q |
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| T |
6769578 |
cttaccatggttcatttatatct |
6769600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 29030474 - 29030389
Alignment:
| Q |
30 |
ttttacctcactcaaatcagagtaacatacacgattcaggtcttgagtttggcaaaatccaacccaaaccgacccacatacacccc |
115 |
Q |
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| T |
29030474 |
ttttacctcacccaaatcaaagtaccttatatggttcaggtcttgggtttggccaaactcaatccaaatcgacccacgtacacccc |
29030389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 14633827 - 14633750
Alignment:
| Q |
30 |
ttttacctcactcaaatcagagtaacatacacgattcaggtcttgagtttggcaaaatccaacccaaaccgacccaca |
107 |
Q |
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| T |
14633827 |
ttttacctcacccaaaccggagtaccatacatgattcagatcttaggtttggtcaaatccaacccaaatccacccaca |
14633750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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