View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19718_high_31 (Length: 217)
Name: NF19718_high_31
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_high_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 11155646 - 11155530
Alignment:
| Q |
1 |
taaagagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgtgaaaattatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155646 |
taaagagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgtgaaaattatgcatca |
11155547 |
T |
|
| Q |
101 |
cattattttttgacgca |
117 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11155546 |
cattattttttgacgca |
11155530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 11200194 - 11200120
Alignment:
| Q |
5 |
gagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgaggcatcacat |
79 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || || || ||||||| ||||||||| ||||||||| |
|
|
| T |
11200194 |
gagttgatatttggaaaagcttgttgttcgcttacgattgttgctgtgttgttcagcaaaaccgatgcatcacat |
11200120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University