View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_high_4 (Length: 573)
Name: NF19718_high_4
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Original strand, 52511837 - 52512387
Alignment:
| Q |
20 |
atgagtagtatacataccttctaagaatttggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttat |
119 |
Q |
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| T |
52511837 |
atgagtagtatacataccttctaagaattgggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttat |
52511936 |
T |
|
| Q |
120 |
tgtttggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatctgtcaatttagtcgtttactaagnnnnnnngaaatga |
219 |
Q |
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| T |
52511937 |
tgtttggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatcagtcaatttagtcgtttactaagaaaaaaagaaatga |
52512036 |
T |
|
| Q |
220 |
gcaaagtagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgt |
319 |
Q |
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| T |
52512037 |
gcaaattagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgt |
52512136 |
T |
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| Q |
320 |
accaccacacatatcacct----------aaatgaaaagtagtattataataaggaagaagaatattattat-----------taaaaaagaatgaggag |
398 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||| ||| |
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| T |
52512137 |
accaccacacatatcacctaaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaagag |
52512236 |
T |
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| Q |
399 |
aaaagagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaa |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512237 |
aaaagagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaa |
52512336 |
T |
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| Q |
499 |
ttaaaaatggagttgaacacaaacatttaagacattgacgcctcgaaacaa |
549 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512337 |
ttaaaaatggagttgaacacaaacatttaagacattgacgcctcgaaacaa |
52512387 |
T |
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