View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19718_low_1 (Length: 845)

Name: NF19718_low_1
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19718_low_1
NF19718_low_1
[»] chr8 (4 HSPs)
chr8 (433-833)||(29136764-29137164)
chr8 (17-289)||(29136372-29136644)
chr8 (554-727)||(28609937-28610110)
chr8 (534-623)||(30044590-30044678)
[»] chr2 (7 HSPs)
chr2 (554-633)||(33577151-33577230)
chr2 (513-596)||(4504591-4504674)
chr2 (532-725)||(36292567-36292759)
chr2 (439-491)||(3970760-3970812)
chr2 (538-606)||(37557279-37557347)
chr2 (532-574)||(37539173-37539215)
chr2 (668-713)||(3970760-3970805)
[»] chr4 (3 HSPs)
chr4 (532-622)||(13311683-13311773)
chr4 (532-613)||(12908485-12908566)
chr4 (548-622)||(13309788-13309863)
[»] chr6 (1 HSPs)
chr6 (513-640)||(27891329-27891457)
[»] chr5 (4 HSPs)
chr5 (580-652)||(30526022-30526094)
chr5 (580-652)||(30566362-30566434)
chr5 (439-478)||(30526176-30526215)
chr5 (439-478)||(30566516-30566555)
[»] chr7 (2 HSPs)
chr7 (513-622)||(5008556-5008665)
chr7 (516-633)||(48493255-48493372)
[»] chr3 (2 HSPs)
chr3 (439-494)||(7926520-7926575)
chr3 (433-504)||(7926714-7926784)
[»] chr1 (2 HSPs)
chr1 (532-618)||(15407262-15407348)
chr1 (515-621)||(43111511-43111617)


Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 433 - 833
Target Start/End: Original strand, 29136764 - 29137164
Alignment:
Q  433 ttaaacggttaacacaattcaaataagtggttaattacgttcagtatatggctaatgaatattacaggtgtcaaattttgttaaccacaaatttatacat 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |    
T  29136764 ttaaacggttaacacaattcaaataagtggttaattacgttcagtatatggctaatgaatattacaggtgtcaaatttttttaaccacaaatttatatgt 29136863  T
Q  533 gattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattgg 632  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136864 gattaaccacaatttgaaggtgttcaaatctacatgtagttgaacatctgaaaattatggttaaccacatccaaattcgtgtttaatgaagttacattgg 29136963  T
Q  633 ttgttaataagttttgacacttcgtgtatcaatttaccatatacagaacataattaataatatatttgaactgtgttaaccacttaaaaagttgtaaccg 732  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  29136964 ttgttaataagtttttacacttcgtgtatcaatttaccatatacagaacataatcaataatatatttgaactgcgttaaccacttaaaaagttgtaaccg 29137063  T
Q  733 aagtagtcaaattttagttgttaaataacactactcttttatattttacccccgttttcgattgggacagaattaggattataggatttagcttctctgt 832  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29137064 aagtagtcaaattttagttgttaaataacactgctgttttatattttacccccgttttcgattgggacagaattaggattataggatttagcttctctgt 29137163  T
Q  833 g 833  Q
    |    
T  29137164 g 29137164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 29136372 - 29136644
Alignment:
Q  17 agggagaacttaccttgtgtgtccaacaagtttcccagaggagattagtcacaatcaaactcagttgaatactttgtacgtatgatatggctataaattc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136372 agggagaacttaccttgtgtgtccaacaagtttcccagaggagattagtcacaatcaaactcagttgaatactttgtacgtatgatatggctataaattc 29136471  T
Q  117 actgcatgttttctcagggtagtattgtactgagtctatttatttgtgtttctttattctaattatctgactcaattgaatttcaagttttagtattatt 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136472 actgcatgttttctcagggtagtattgtattgagtctatttatttgtgtttctttattctaattatctgactcaattgaatttcaagttttagtattatt 29136571  T
Q  217 gatctcatataacttcaccttaaagcattgatggtaattatacactgcatgttcttttatgctggttctcaat 289  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29136572 gatctcatataacttcaccttaaagcattgatggcaattatacactgcatgttcttttatgctggttctcaat 29136644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 554 - 727
Target Start/End: Original strand, 28609937 - 28610110
Alignment:
Q  554 gttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattggttgttaataagttttgacact 653  Q
    ||||||||||||||| ||||||||| || |  ||||||||||||| |||||| ||| ||| |||||||||| ||||| || |||||| | ||| ||||      
T  28609937 gttcaaatctacatgcagttgaacacctaaatattatggttaaccccatccatatttgtgattaatgaagtaacattagtggttaatgactttagacata 28610036  T
Q  654 tcgtgtatcaatttaccatatacagaacataattaataatatatttgaactgtgttaaccacttaaaaagttgt 727  Q
    |||| |||| ||| || || |||  |||||||||||  |  |||||||||||  ||||||||||||||||||||    
T  28610037 tcgtatatccattgactatctactaaacataattaaccacctatttgaactgacttaaccacttaaaaagttgt 28610110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 623
Target Start/End: Complemental strand, 30044678 - 30044590
Alignment:
Q  534 attaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaag 623  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||| | |||||| ||||||| | ||| ||||| || |||||||||    
T  30044678 attaacctcaattttgaggtgttcaaatctacatgtagttgaacatct-aaaattatagttaaccccttcctaattcatggttaatgaag 30044590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 9e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 554 - 633
Target Start/End: Complemental strand, 33577230 - 33577151
Alignment:
Q  554 gttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattggt 633  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||||| |||||| ||| |||||||||||||||||||    
T  33577230 gttcaaatctacatggagttgaacatctgaaaataatggttaaccacattcaaatttgtggttaatgaagttacattggt 33577151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 513 - 596
Target Start/End: Original strand, 4504591 - 4504674
Alignment:
Q  513 ttaaccacaaatttatacatgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaa 596  Q
    |||||||||||| || || || |||| ||||  ||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  4504591 ttaaccacaaatgtaaacgtggttaatcacaggtttaaggagttcaaatctacatgtagttgaacatttgaaaattatggttaa 4504674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 532 - 725
Target Start/End: Complemental strand, 36292759 - 36292567
Alignment:
Q  532 tgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattg 631  Q
    ||||||||||||||||| ||  ||| ||||||| ||||||||||||| || | ||| | ||||| |||  || ||||| ||| ||||||||||||| | |    
T  36292759 tgattaaccacaattttcagctgtttaaatctagatgtagttgaacaactaaaaatgacggttagccatgtcaaaatttgtggttaatgaagttacgtcg 36292660  T
Q  632 gttgttaataagttttgacacttcgtgtatcaatttaccatatacagaacataattaataatatatttgaactgtgttaaccacttaaaaagtt 725  Q
     | |||||| ||||||||||| | || |||| ||| ||||| ||| |||| |||||||  |  ||||||||  || |||| |||||||||||||    
T  36292659 atggttaatgagttttgacac-tagtatatccattaaccatctactgaacgtaattaactacctatttgaagggtattaatcacttaaaaagtt 36292567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 3970760 - 3970812
Alignment:
Q  439 ggttaacacaattcaaataagtggttaattacgttcagtatatggctaatgaa 491  Q
    |||||||||| |||||||| || |||||||| ||||||||||||| |||||||    
T  3970760 ggttaacacagttcaaatatgtagttaattatgttcagtatatggttaatgaa 3970812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 538 - 606
Target Start/End: Original strand, 37557279 - 37557347
Alignment:
Q  538 accacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaa 606  Q
    ||||||||||| ||| | |||||| |||| ||||||||||| |||| ||||||||||||| || |||||    
T  37557279 accacaattttcaggtgatcaaatatacacgtagttgaacacctgaaaattatggttaacaacgtccaa 37557347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 532 - 574
Target Start/End: Complemental strand, 37539215 - 37539173
Alignment:
Q  532 tgattaaccacaattttaaggcgttcaaatctacatgtagttg 574  Q
    ||||||||||||||||| | | |||||||||||||||||||||    
T  37539215 tgattaaccacaattttcaagtgttcaaatctacatgtagttg 37539173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 713
Target Start/End: Complemental strand, 3970805 - 3970760
Alignment:
Q  668 accatatacagaacataattaataatatatttgaactgtgttaacc 713  Q
    ||||||||| ||||||||||||  | ||||||||||||||||||||    
T  3970805 accatatactgaacataattaactacatatttgaactgtgttaacc 3970760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 532 - 622
Target Start/End: Complemental strand, 13311773 - 13311683
Alignment:
Q  532 tgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaa 622  Q
    ||||||| ||| ||||||||| |||||| |||| ||||||||||||| |||| |||||  ||||||||||||||| |||||| | ||||||    
T  13311773 tgattaaacactattttaaggtgttcaattctatatgtagttgaacacctgaaaattagagttaaccacatccaatttcgtggtaaatgaa 13311683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 532 - 613
Target Start/End: Original strand, 12908485 - 12908566
Alignment:
Q  532 tgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtg 613  Q
    ||||||| ||| ||||||||| |||||| |||||||||||||||||| |||| | |||| |||||||||||| |||| ||||    
T  12908485 tgattaaacactattttaaggtgttcaattctacatgtagttgaacacctgaaagttatagttaaccacatcaaaatccgtg 12908566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 548 - 622
Target Start/End: Complemental strand, 13309863 - 13309788
Alignment:
Q  548 taaggcgttcaaatctacatgtagttgaacatctgataattatggtt-aaccacatccaaattcgtgtttaatgaa 622  Q
    ||||| |||||| |||||||||||||||||| |||| |||||| ||| |||||||||||| |||||| | ||||||    
T  13309863 taaggggttcaattctacatgtagttgaacacctgaaaattatagttaaaccacatccaagttcgtggtaaatgaa 13309788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 513 - 640
Target Start/End: Original strand, 27891329 - 27891457
Alignment:
Q  513 ttaaccacaaatttatacatgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctg-ataattatggttaaccacatccaaattcg 611  Q
    ||||||||||| ||  || ||||||||| ||||||| ||| ||| |||||||||||||||||||||  || | ||||||||||| | || |||| |||||    
T  27891329 ttaaccacaaacttggacgtgattaaccccaattttgaggtgtttaaatctacatgtagttgaacacatgcaaaattatggttagctacgtccatattcg 27891428  T
Q  612 tgtttaatgaagttacattggttgttaat 640  Q
    |  ||||||||||||| || || ||||||    
T  27891429 ttgttaatgaagttacgttagtggttaat 27891457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 652
Target Start/End: Complemental strand, 30526094 - 30526022
Alignment:
Q  580 ctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattggttgttaataagttttgacac 652  Q
    |||| |||||||| ||||||| |||||||| ||| || |||||||||  ||||| ||||||||||||||||||    
T  30526094 ctgaaaattatggctaaccacttccaaatttgtggttgatgaagttatgttggtggttaataagttttgacac 30526022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 652
Target Start/End: Complemental strand, 30566434 - 30566362
Alignment:
Q  580 ctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattggttgttaataagttttgacac 652  Q
    |||| |||||||| ||||||| |||||||| ||| || |||||||||  ||||| ||||||||||||||||||    
T  30566434 ctgaaaattatggctaaccacttccaaatttgtggttgatgaagttatgttggtggttaataagttttgacac 30566362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 478
Target Start/End: Complemental strand, 30526215 - 30526176
Alignment:
Q  439 ggttaacacaattcaaataagtggttaattacgttcagta 478  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  30526215 ggttaacacacttcaaataagtggttaattgcgttcagta 30526176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 478
Target Start/End: Complemental strand, 30566555 - 30566516
Alignment:
Q  439 ggttaacacaattcaaataagtggttaattacgttcagta 478  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  30566555 ggttaacacacttcaaataagtggttaattgcgttcagta 30566516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 622
Target Start/End: Original strand, 5008556 - 5008665
Alignment:
Q  513 ttaaccacaaatttatacatgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgt 612  Q
    ||||||| ||||||  || |||| ||||||  |||| | | |||| ||||||||||||||| ||||||||| |||||||| |||| |  |||||||| ||    
T  5008556 ttaaccaaaaatttggacgtgatcaaccacttttttcacgtgttccaatctacatgtagtttaacatctgaaaattatggataactatgtccaaatttgt 5008655  T
Q  613 gtttaatgaa 622  Q
    | ||||||||    
T  5008656 ggttaatgaa 5008665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 633
Target Start/End: Complemental strand, 48493372 - 48493255
Alignment:
Q  516 accacaaatttatacatgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtt 615  Q
    |||||||||||  || ||||| ||||||| |||   | ||||||||||||||| | ||| |||  ||| ||||||| ||||| |||| | |||||||| |    
T  48493372 accacaaattttgacgtgatttaccacaactttcgcgtgttcaaatctacatgcaattggacacttgaaaattatgattaacgacattcgaattcgtgat 48493273  T
Q  616 taatgaagttacattggt 633  Q
    ||||||||||| ||||||    
T  48493272 taatgaagttatattggt 48493255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 7926520 - 7926575
Alignment:
Q  439 ggttaacacaattcaaataagtggttaattacgttcagtatatggctaatgaatat 494  Q
    ||||||||||||||||||| ||||||| ||||||  |||| |||||||||| ||||    
T  7926520 ggttaacacaattcaaatatgtggttatttacgtatagtagatggctaatggatat 7926575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 504
Target Start/End: Complemental strand, 7926784 - 7926714
Alignment:
Q  433 ttaaacggttaacacaattcaaataagtggttaattacgttcagtatatggctaatgaatattacaggtgtc 504  Q
    ||||| ||||||||| ||| ||||| ||||||| |||||||||||| |||| |||||||||| | |||||||    
T  7926784 ttaaatggttaacacgatttaaatatgtggtta-ttacgttcagtaaatggttaatgaatataaaaggtgtc 7926714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 532 - 618
Target Start/End: Original strand, 15407262 - 15407348
Alignment:
Q  532 tgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaa 618  Q
    |||||||||| ||||||  || ||||||||||| ||  ||||||||   | | ||||||||||||||||||||||||| ||| ||||    
T  15407262 tgattaaccataattttctggtgttcaaatctagataaagttgaactcttaaaaattatggttaaccacatccaaatttgtgattaa 15407348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 621
Target Start/End: Original strand, 43111511 - 43111617
Alignment:
Q  515 aaccacaaatttatacatgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgt 614  Q
    ||||||||||||  |  |||||||| |||||||| ||| |||  | |||||||||||  ||||| |||| ||||||||||||| || | |||||| |||     
T  43111511 aaccacaaatttgaatgtgattaactacaattttgaggtgtttgactctacatgtaggagaacacctgaaaattatggttaacgacgttcaaatttgtgg 43111610  T
Q  615 ttaatga 621  Q
    |||||||    
T  43111611 ttaatga 43111617  T

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