View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_low_12 (Length: 384)
Name: NF19718_low_12
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_low_12 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 117 - 367
Target Start/End: Original strand, 2125 - 2375
Alignment:
| Q |
117 |
ttgttccaatacattctttttcaagtttcacagtttctttatctgccatcaacaacaaccatgtatcagaatcatcttcttctgattcttcttccaactc |
216 |
Q |
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| T |
2125 |
ttgttccaatacattctttttcaagtttcccagtttctttatctgccatcaacaacagccatgtatcagaatcatcttcttctgattcttcttccaactt |
2224 |
T |
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| Q |
217 |
tcttcttgaatatgatttctaccgtgattcatgtcctcatgctgagcacattgttcgttctacgcttcacctgctttacaaaactaatcctgctttggtt |
316 |
Q |
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| T |
2225 |
tcttcttgaatatgatttctaccgtgattcatgtcctcatgctgagcacattgttcgttctacgcttcacctgctttacaaaactaatcctgctttggtt |
2324 |
T |
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| Q |
317 |
cctgctcttattcgtcttgtttttcatgattgcttcattcaggtccatttt |
367 |
Q |
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| T |
2325 |
cctgctcttattcgtcttgtttttcatgattgcttcattcaggtccatttt |
2375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2009 - 2062
Alignment:
| Q |
1 |
accattgatactaccaaaattaattcttctgattcttgtgttatgtcttttatt |
54 |
Q |
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| T |
2009 |
accattgatactaccaaaattaattcttctgattcttgtgttatgtcttttatt |
2062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 117 - 367
Target Start/End: Original strand, 3451344 - 3451594
Alignment:
| Q |
117 |
ttgttccaatacattctttttcaagtttcacagtttctttatctgccatcaacaacaaccatgtatcagaatcatcttcttctgattcttcttccaactc |
216 |
Q |
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| T |
3451344 |
ttgttccaatacattctttttcaagtttcccagtttctttatctgccatcaacaacagccatgtatcagaatcatcttcttctgattcttcttccaactt |
3451443 |
T |
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| Q |
217 |
tcttcttgaatatgatttctaccgtgattcatgtcctcatgctgagcacattgttcgttctacgcttcacctgctttacaaaactaatcctgctttggtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451444 |
tcttcttgaatatgatttctaccgtgattcatgtcctcatgctgagcacattgttcgttctacgcttcacctgctttacaaaactaatcctgctttggtt |
3451543 |
T |
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| Q |
317 |
cctgctcttattcgtcttgtttttcatgattgcttcattcaggtccatttt |
367 |
Q |
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| T |
3451544 |
cctgctcttattcgtcttgtttttcatgattgcttcattcaggtccatttt |
3451594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3451228 - 3451281
Alignment:
| Q |
1 |
accattgatactaccaaaattaattcttctgattcttgtgttatgtcttttatt |
54 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451228 |
accattgatactaccaaaattaattcttctgattcttgtgttatgtcttttatt |
3451281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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