View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_low_14 (Length: 320)
Name: NF19718_low_14
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 28329137 - 28329444
Alignment:
| Q |
1 |
tgttgaaaccacttagctattccttatccaacaatctcttttctctcattcttcagaggcatctcactgaaaccacttagcctttccttgtccaacgatc |
100 |
Q |
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| T |
28329137 |
tgttgaaaccacttagctattccttatccaacaatctcttttctctcattcttcagaggcatctcactgaaaccacttagcctttccttgtccaatgatc |
28329236 |
T |
|
| Q |
101 |
atcattttccgagatgacattgtatctcagaaaattcaacacattccgtccaatctcaaccttgtttcttcggttttctcatgctcgcccttccgctcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28329237 |
atcattttccgagatgacattgtatctcagaaaattcaacacattccgtccaatctcaaccttgtttcttcggttttctcatgctcgcccttccgctcca |
28329336 |
T |
|
| Q |
201 |
actcaatttcaatcacctcagaatgaggatcttgattctttcaagaatctaccggttaagtcttcttctccacgcataatcgagttcaacaatcgattac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28329337 |
actcaatttcaatcacctcagaatgaggatcttgattctttcaagaatctaccggttaagtcttcttctccacgcataatcgagttcaacaatcgattac |
28329436 |
T |
|
| Q |
301 |
actctctg |
308 |
Q |
| |
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|||||||| |
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| T |
28329437 |
actctctg |
28329444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 28329110 - 28329168
Alignment:
| Q |
38 |
cttttctctcattcttcagaggcatctcactgaaaccacttagcctttccttgtccaac |
96 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |
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| T |
28329110 |
cttttctctcattcttcagaggcatcttgttgaaaccacttagctattccttatccaac |
28329168 |
T |
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