View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19718_low_17 (Length: 309)
Name: NF19718_low_17
Description: NF19718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19718_low_17 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 3017186 - 3017465
Alignment:
| Q |
16 |
atcagtcggcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtc |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017186 |
atcaatcggcccttaattaatacattgatttatgtattatcaataacagtggtaaaaatctcaaataacaaacttggccctttaaaacttcagcagagtc |
3017285 |
T |
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| Q |
116 |
acttcactccatatcaaaaacatcaataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaa |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017286 |
acttcactccatttcaaaaacatcaataagagaagatcaaaatgaacaattgattcaatggtttattaattttcggatttggaatagaaggagaaattaa |
3017385 |
T |
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| Q |
216 |
ggattaatgaaaatttggtccttttgctttagatttacaaaatgaacatgatgatgaaattaaacaaggtagcttaatct |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3017386 |
ggattaatgaaaatttggtccttttgctttagatttacaaaatgaacatgatgatgaaattaaacaaggtagctaaatct |
3017465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 34343460 - 34343739
Alignment:
| Q |
16 |
atcagtcggcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34343460 |
atcagtcggcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcaaagtc |
34343559 |
T |
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| Q |
116 |
acttcactccatatcaaaaacatcaataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaa |
215 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34343560 |
acttcactccatatcaaaaacattaacaagagaagatcaaaatgagcagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaa |
34343659 |
T |
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| Q |
216 |
ggattaatgaaaatttggtccttttgctttagatttacaaaatgaacatgatgatgaaattaaacaaggtagcttaatct |
295 |
Q |
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| T |
34343660 |
ggattaatgaaaatttggtctttttgctttagatttacaaaatgaacatgatgatgaaattaaacaaggtagctaaatct |
34343739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 46420945 - 46420666
Alignment:
| Q |
16 |
atcagtcggcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
46420945 |
atcagtcggcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacatcagcaaagtc |
46420846 |
T |
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| Q |
116 |
acttcactccatatcaaaaacatcaataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaa |
215 |
Q |
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| T |
46420845 |
acttcactccatatcaaaaacattaacaagagaagatcaaaatgagcagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaa |
46420746 |
T |
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| Q |
216 |
ggattaatgaaaatttggtccttttgctttagatttacaaaatgaacatgatgatgaaattaaacaaggtagcttaatct |
295 |
Q |
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| T |
46420745 |
ggattaatgaaaatttggtctttttgctttagatttacaaaatgaacatgatgatgaaattaaacaaggtagctaaatct |
46420666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 40 - 282
Target Start/End: Complemental strand, 37279399 - 37279157
Alignment:
| Q |
40 |
ttgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtcacttcactccatatcaaaaacatc |
139 |
Q |
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| T |
37279399 |
ttgatttatgtattatcaataacagtggtaacaatctcaaataaaaaactcggccctttaaaacttcagcaaagtcacttcactccatatcaaaaacatt |
37279300 |
T |
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| Q |
140 |
aataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggattaatgaaaatttggtccttt |
239 |
Q |
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| T |
37279299 |
aacaatagaagattaaaatgagcaattgattcaatggtttattaatttttggatttggaatagaaggggaacttaaggattaatgaaaattgggtctttt |
37279200 |
T |
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| Q |
240 |
tgctttagatttacaaaatgaacatgatgatgaaattaaacaa |
282 |
Q |
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| T |
37279199 |
tgctttagattgacaaaatgaacatgatgttgaaattaaacaa |
37279157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 3195 - 3264
Alignment:
| Q |
78 |
aaataacaaacttggccctttaaaacttcagcagagtcacttcactccatatcaaaaacatcaataagag |
147 |
Q |
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| T |
3195 |
aaataacaagctcgaccctttaaaacttcagcaacgttgcttcactccatatcaaaaccattaacaagag |
3264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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